Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26100 798 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 153 / 1e-40 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 108 / 5e-25 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 94 / 1e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 91 / 8e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G55580 89 / 1e-18 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 89 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 88 / 4e-18 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 82 / 6e-16 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 81 / 9e-16 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009400 [exp] 934 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 167 / 1e-45 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.011G121900 [exp] 156 / 1e-41 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.007G100200 [exp] 107 / 6e-25 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 94 / 7e-20 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.004G101800 [exp] 91 / 2e-19 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 91 / 5e-19 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G113200 [exp] 87 / 3e-18 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.010G199100 [exp] 87 / 4e-18 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006242 [exp] 795 / 0 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10011399 [exp] 786 / 0 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 783 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036945 [exp] 524 / 0 AT3G26100 565 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 103 / 2e-23 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 98 / 4e-21 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029536 [exp] 92 / 1e-19 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 91 / 7e-19 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 91 / 7e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10033543 [exp] 88 / 1e-18 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.012G018600.6 pacid=42783750 polypeptide=Potri.012G018600.6.p locus=Potri.012G018600 ID=Potri.012G018600.6.v4.1 annot-version=v4.1 ATGCCCATGGATGCCACTACGAGTGGAACCCCAACTATACAATACCATAACATCAATGATCAACCTGTCACTGTCACAGCCATTGTTGCTGTTCCTGTTT CAACATATCAGCGAAATCAGCGCCATTGTTTTGGGGACTTGATTCCTGGAGAATTCCCGTTAGCTACCAATCCATCAATTGTCCTTCATGTTCTCACCGC GTGTAACTTGGATCCTCAAGATCTTGCAAAACTAGAGGCAACATGCTCCTTCTTTAGGCAGCCAGCAAACTTCCCCCCCGACAATGAATTATCCATATCA GAGCTTGCTGCTCTGGATATGTGTCAAAAAAGAGCCATATTTAAGCCAATGGCACCTGAAGAACGCCAAGATTTGAAACAAAGATGCGGGGGCTCGTGGA AACTGGTCCTGCGATTTTTGCTGGCTGGAGAAGCATGTTGCAGGAGGGAGAGATCCCAGGCAATTGCAGGACCTGGTCACAGTATTGCTGTGACATCGAA TGGAGCAGTTTACTCCTTTGGCTCTAATAGCTCAGGACAACTTGGGCATGGCACCACTGAAGAGGAGTGGCGACCTCGGCAAATCAGATCCCTCCGAGGC ATTCGAATTATCCAAGCAGCTGCTGGACCTGGTAGGACAATGCTGATTAGTGATGCTGGGCGGGTTTATGCCTTTGGAAAGGATTCCTTTGGTGAAGCTG AGTACGGAGCTCAAGGATCTAAAATGGTTACAACTCCACAGCTGGTTGAGTCCTTGAAAAACATATTTGTGGTGCAAGCTGTGATAGGAAATTTTTTCAC TGCTGTATTGTCCAGAGAAGGAAGGGTTTATACATTTTCTTGGGGAAATGATGGCAGAATTGGTCATCAGACAGAGCCAAATGATGTTGAACCCCATCCT TTGTTGGGGGCACTTGAGAACATTCCAGTGGTACAAATTGCAGCTGGATACTGTTACCTTCTTGCTCTGGCCTGTCATCCTAGTGGCATGTCAGTATACT CTGTTGGATGTGGCTTGGGTGGGAAGCTTGGACATGGATCAAGAACTGATGAGAAATACCCCCGATTGATAGAACAGTTCCAGCTTTTGAACCTTCAGCC AATGGTGGTTGCCGCTGGTGCATGGCATGCTGCTGTGGTAGGAAGGGATGGGCGGGTTTGCACATGGGGTTGGGGTCGCTATGGGTGTTTGGGCCATGGA AATGAAGAGTGTGAATCAGTTCCTAAGGTGGTGGAAGCATTGAGCAAGGTCAAAGCTGTTAATGTTGCTACAGGGGATTACACAACCTTCGTGGTTTCTG ATGAGGGTGACGTATACTCATTTGGTTGTGGTGAATCTGCTAGTCTAGGTCATAATGCTGCTGCTGATGAACAGGGAAATAGGCATGTCAATGTGTTAAG CCCAGAGCTAGTAACATCATTGAAGGAGGTGAAGGAGCGAGTAGTGCAGATCAGCCTAACCAATTCCATATACTGGAATGCCCACACCTTTGCACTCACT GAATCTGGGAAACTGTATGCATTTGGTGCCGGAGACAAAGGGCAGCTTGGTATGGAACTTGTCAACAACCAAAGCGAAAGGGGGAATCCAGAACGCGTGG ATGTGGATCTAAGGTAG
AA sequence Show only first row Show all	>Potri.012G018600.6 pacid=42783750 polypeptide=Potri.012G018600.6.p locus=Potri.012G018600 ID=Potri.012G018600.6.v4.1 annot-version=v4.1 MPMDATTSGTPTIQYHNINDQPVTVTAIVAVPVSTYQRNQRHCFGDLIPGEFPLATNPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFPPDNELSIS ELAALDMCQKRAIFKPMAPEERQDLKQRCGGSWKLVLRFLLAGEACCRRERSQAIAGPGHSIAVTSNGAVYSFGSNSSGQLGHGTTEEEWRPRQIRSLRG IRIIQAAAGPGRTMLISDAGRVYAFGKDSFGEAEYGAQGSKMVTTPQLVESLKNIFVVQAVIGNFFTAVLSREGRVYTFSWGNDGRIGHQTEPNDVEPHP LLGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHG NEECESVPKVVEALSKVKAVNVATGDYTTFVVSDEGDVYSFGCGESASLGHNAAADEQGNRHVNVLSPELVTSLKEVKERVVQISLTNSIYWNAHTFALT ESGKLYAFGAGDKGQLGMELVNNQSERGNPERVDVDLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26100			Regulator of chromosome conden...		Potri.012G018600 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	4.58	0.7553
AT3G26100			Regulator of chromosome conden...		Potri.015G009400 [exp]	7.48	0.6913
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	15.81	0.7537
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Potri.005G125500 [exp]	18.86	0.7646
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	19.18	0.7074
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	19.36	0.7075
AT5G63460			SAP domain-containing protein ...		Potri.015G094600 [exp]	20.49	0.7031
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Potri.014G083200 [exp]	24.00	0.6044	Pt-SKIP4.1
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.010G215000 [exp]	25.45	0.7256
AT2G19390			unknown protein		Potri.018G056400 [exp]	25.47	0.7293

Compare expression of checked genes

Potri.012G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.