Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61850 141 / 9e-40 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT4G24060 139 / 1e-38 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G46590 133 / 2e-36 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT1G64620 129 / 9e-35 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 106 / 3e-26 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 105 / 5e-26 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60200 101 / 3e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G45610 100 / 4e-25 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 100 / 2e-24 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 100 / 4e-24 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009300 [exp] 345 / 7e-120 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 256 / 6e-85 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 244 / 2e-80 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 219 / 2e-70 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 206 / 1e-65 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G081300 [exp] 119 / 3e-31 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 116 / 2e-30 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.009G029500 [exp] 107 / 7e-27 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 105 / 5e-26 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010113 [exp] 131 / 8e-36 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 129 / 7e-35 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10003207 [exp] 127 / 5e-34 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 120 / 2e-31 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 113 / 3e-31 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 114 / 2e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 112 / 1e-28 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 112 / 5e-28 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 108 / 2e-27 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 104 / 1e-26 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G018700.1 pacid=42782618 polypeptide=Potri.012G018700.1.p locus=Potri.012G018700 ID=Potri.012G018700.1.v4.1 annot-version=v4.1 ATGGATACTGCTACTCAGTGGGCACAGGGGATTGGTGCTGTTAATCCAATGGAAGGTTCAAGGCCTGATGTGTTAGAGAGAAGGGCAAGGCCTCAAAAGG ATCAAGCTTTGAATTGTCCAAGGTGCAATTCCACTAATACCAAATTTTGTTACTACAACAACTATAGTCTTTCTCAGCCAAGGTACTTTTGCAAGACTTG TAGAAGGTATTGGACTGCAGGTGGGTCTTTAAGAAATGTTCCAGTTGGTGGTGGTTCAAGAAAGAACAAGAGGTCATCAAGTACTGCATCAACATCAGCA GCAGGAGCAGCTGCTTCAAAGAAGTTTCCTCTTGATCTGACCCAGCCAAATCTCCCCCATTCAGCTTCTCAAAACCCTAAGATCCATGAAGGTCAAGATC TAAATCTAGCTTACCCCCCATCAGCTGACGATTATAGTAATTTGTCTGAGTTTGTTGAGATACCTTTTGATACTGAAAGCAACAAAACCCACCATCAAAA CCCTAATCCTTCAAGTACATCTCCCTCTCATCATCATCATCATCACGTCTCACCTATGGAGTTTCTCAAGAGTACTGCCATGAATTCAAGAGGATTTAGT GCTTTCATGTCAATTCCACCACTATCCGATTCAAACAACACCATGTTTTCAACTGGGTTTCCTTTACAAGAATTCAAGTCAACTCAGAATTTTTCTTTAG AAGGGCTTGAAAGTGGGTATAGTAACACTCAAGGGGTGCACGAGACTTGTGGTAGTGCAAGGCTTTTGTTTCCTATAGAAGACTTGAAGCAACAAGTTCC AAGCAATACTGAATTTGAACAGAATACCAGAGAGCAAAGAGATAATGCTCCAGTTGGGTATTGGAATGGAATGTTAGGTGGTGGATCATGGTAA
AA sequence Show only first row Show all	>Potri.012G018700.1 pacid=42782618 polypeptide=Potri.012G018700.1.p locus=Potri.012G018700 ID=Potri.012G018700.1.v4.1 annot-version=v4.1 MDTATQWAQGIGAVNPMEGSRPDVLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSTASTSA AGAAASKKFPLDLTQPNLPHSASQNPKIHEGQDLNLAYPPSADDYSNLSEFVEIPFDTESNKTHHQNPNPSSTSPSHHHHHHVSPMEFLKSTAMNSRGFS AFMSIPPLSDSNNTMFSTGFPLQEFKSTQNFSLEGLESGYSNTQGVHETCGSARLLFPIEDLKQQVPSNTEFEQNTREQRDNAPVGYWNGMLGGGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	0	1
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	2.00	0.8954
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G249900 [exp]	3.87	0.8791
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	4.00	0.8766
AT5G55650			unknown protein		Potri.014G167700 [exp]	4.24	0.8762
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	6.00	0.8864
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	6.70	0.8838
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	11.22	0.8382
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.008G097900 [exp]	11.40	0.8470
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.001G213700 [exp]	12.24	0.8216
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	13.41	0.8575	MYB124.2,MYB196

Compare expression of checked genes

Potri.012G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.