Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 463 / 2e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 456 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 442 / 2e-142 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 440 / 3e-141 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 430 / 3e-137 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 425 / 4e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 419 / 9e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 418 / 8e-134 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 416 / 1e-132 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 420 / 1e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 469 / 2e-151 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 450 / 1e-144 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 451 / 4e-144 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 442 / 9e-143 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 442 / 2e-142 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 445 / 1e-141 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 440 / 4e-141 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 432 / 2e-139 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G021300 [exp] 428 / 2e-138 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022368 [exp] 995 / 0 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 983 / 0 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007772 [exp] 592 / 0 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 451 / 1e-146 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014594 [exp] 443 / 8e-144 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 443 / 3e-143 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 433 / 1e-137 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 423 / 2e-137 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 426 / 2e-136 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 426 / 7e-136 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G018800.1 pacid=42783822 polypeptide=Potri.012G018800.1.p locus=Potri.012G018800 ID=Potri.012G018800.1.v4.1 annot-version=v4.1 ATGACTAGCCAACTGCTGGAACCCATTGCTTGCCCACCATCACCACTTAACCATGTCCCCAACATTCCTCACAACCTCACTGCCCTTTCCTTTCAGAAAC TGAAACAAGCCCATCAACCAGTTAACATTTCTCAGCAAAAAAACCGGTCCAATTTCTCTCTACTAGACAATAAGCCATTAAATACAAGCAAGTATGCTTC AGTTCTTGATTCTTGTAAATGCCCAAAACTGGGAAAACAGGTTCATGCTCACACAATCAAAACTGGGTTCGATGCTGATGGATTTATAGATACCAAGTTG CTTCAAATGTATGCAAGGTGTGGTTTGTTAAAAGATGCAGACTTTTTGTTTGAAACGATGCCAATGAGAAACTTGCATTCGTGGAAAGCAATTCTTAGTG TGTATTTGGATCATGGGCTGTTTGAGGAAGCGTTTTTACTCTTTCAAGTATTGCAATTTGACGGTGTTGAATTGGATTTCTTTGTGTTTCCTTTAGTGTT TAAGGCTTGTAGTGGCCTTGGTAGTGTAGAACTAGGGAGGCAGTTACATGGGTTGGTGATAAAGTTTCGGTTTTGTTTGAATATTTATGTGAGTAATGCT TTGATAGATATGTATGGTAAATGTGGAAGCTTGGATGATGCTAAGAAAGTTTTAGTAAAGATGCCTGAAAGAGATAGTGTAACATGGAATTCTGTTATAA CAGCTTGTGCTGCTAATGGGATGGTTTATGAGGCATTGGAGTTTTTGGAGAAAATGAAGTCTTTAGATTATTCTATGCCAAATGTTGTTTCTTGGAGTGC AGTTATAGGAGGGTTTGCCCAGAATGGTTATGATGAGGAAGCCATAGAGATGCTATTTAGAATGCAAGTAGAAGGGCTTGTACCGAATGCTCAAACCTTG GCGGGTGTTCTTCCAGCATGTGCTAGATTACAAAGGCTTGACCTTGGAAAGCAACTCCATGGTTATATCACGAGACATGATTTTATCTCTAACCCTGTTG TGGTGAATGCATTAGTTGATGTGTACAGGAGGTGTGGTGATATGGGAGGTGCGGCTAAGATCTTTTTAAAATTCTCAGTGAAAAATGTACTATCTTGTAA TACAATGATTGTTGGGTATTGCGAAAGCGGTGATGTCTCCAAGGCCAAGGAGCTCTTTGATTGCATGGATGTTTTAGGAATAGAAAGGGGTTTAATTTCA TGGAACTCGATTATTTCAGGTTACGTTAGAAACTTCATGTTTGATGAAGCTTTCAGCATGTTTCAGAATATGCTAATGGAAGAAGGGATTGAGCCAGATT CTTTTACTTTAGGGAGTGTTTTGACTGCTTGTGCTGATACAATTTCTTTGAGGCAAGGGAAGGAGATACATGCCCAAGCCATTGTCAAGGGCTTGCAATC GGATACCTTTGTTGGTGGGGCTCTGGTGGAAATGTACTCTAAATGCCAGGACCTAACGGCTGCCCAGGTGGCTTTTGATGAGGTGATGGAGAAGGATGTG CCAACATGGAATGCTCTGATCTCAGGCTATGCTCGCAGTAACCAGATTGAAAGAATTCAATATCTTCTTGAGAAGATGAAAGGAGATGGTTATCATCCAA ACATTTATACATGGAACAGCATTCTTGCAGGTCTTGTGGAAAACAGACAGTTAGATTTAACAATGCAGTTGTTCTCTGAAATGCAGATCTCAAAGTTGAG GCCTGATATTTACACAGTTGGAATAATTCTCCCTGCTTGCTCGAGGTTGGCCACTCTTGAGCGAGGAAAACAAGCTCATGCACACTCAATTAAATGTGGT TATGACACAGATGTCCACATAGGAGCAGCCCTTGTGGACATGTATGCAAAATGTGGAAGTTTAAAGTATGCACAGTTAGCCTATGATAGGATATCAAACC CTAATTTGGTGTCCCACAATGCCATGCTTACTGCATGTGCGATGCATGGACATGGGGAAGAGGGAATTTCTCTCTTTCAAACAATGCTGGCCTTAGGTTT TATACCAGACCATGTGACTTTCCTGTCTGTTCTCTCCTCATGTGTTCATGTTGGATCAGTCGAGACAGGCTGTGAGTTTTTTGATTTGATGGGGTATTAT AACGTTAAACCCACATTAAAACACTACACATCTATGGTTGATCTTCTAAGTCGTTCAGGACAGCTTCATGAAGCTTATGAGCTTATAAAGAAAATGCCTG TGGAATGTGATTCAGTTTTGTGGGGTGCTTTGCTTGGAGGCTGTGTTACTCATGGTAATATTGAGTTGGGAGAAATTGCAGCAGAGAGGCTGATAGAATT GGAGCCAAACAATAGTGGAAACTATGTATTACTGGCTAATTTACATGCTTATGCTAGGAGATGGACTGACCTAGCGAGAGTAAGAGGCATGATGAAGGAT AGGGGAATGCACAAGAGCCCTGGATGCAGTTGGATCGAGGACAAGAATGAAATTCATTCCTTTCTTGCTTGTGACAGATCTCATAAGAGAGCAGAAGAAA TTTATGCTACTCTAGATTACTTAGCCCTTCACATGAAAACAGGGATAGTACATGGGTAA
AA sequence Show only first row Show all	>Potri.012G018800.1 pacid=42783822 polypeptide=Potri.012G018800.1.p locus=Potri.012G018800 ID=Potri.012G018800.1.v4.1 annot-version=v4.1 MTSQLLEPIACPPSPLNHVPNIPHNLTALSFQKLKQAHQPVNISQQKNRSNFSLLDNKPLNTSKYASVLDSCKCPKLGKQVHAHTIKTGFDADGFIDTKL LQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNA LIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTL AGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLIS WNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDV PTWNALISGYARSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCG YDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYY NVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKD RGMHKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATLDYLALHMKTGIVHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	1.41	0.9534
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	2.00	0.9644
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	2.23	0.9511
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	4.00	0.9485
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	4.24	0.9530
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	6.00	0.9515
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	6.48	0.9491
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	6.63	0.9307
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	7.93	0.9473
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	9.94	0.9419

Compare expression of checked genes

Potri.012G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.