Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27730 1056 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53510 1026 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT5G53520 1011 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G10770 981 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 845 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 828 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G16370 780 / 0 ATOPT3 oligopeptide transporter (.1) AT5G55930 776 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G26590 763 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G019500 [exp] 1271 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.003G145500 [exp] 1009 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 986 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 847 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 846 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 809 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 779 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G006500 [exp] 777 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.006G006000 [exp] 775 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022372 [exp] 1093 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10006581 [exp] 999 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10041897 [exp] 959 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007770 [exp] 946 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10028445 [exp] 796 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10039075 [exp] 777 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10022543 [exp] 771 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10038784 [exp] 771 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10031978 [exp] 764 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 759 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.012G019700.1 pacid=42782698 polypeptide=Potri.012G019700.1.p locus=Potri.012G019700 ID=Potri.012G019700.1.v4.1 annot-version=v4.1 ATGGCTGGGGCAAATGAGGTTCAGGCCATGGAAATAGAGGATGAAGAGGAGTGTCCAGTAAAGCAAGTAGATCTTACTGTTCTGAAAACTGATGACCCCA CCTTGCCTGTTTTGACGTTCAGAATGTGGGTTCTTGGTCTTGGTTCTTGTGTCCTCTTGTCCTTTGTAAACCAGTTTTTCTGGTACAGGACACAACCGAT GTTCATTTCGTCTATTTCTGCACAGATTGCTGTGGTGCCATTGGGGCATCTAATGGCTAAAAAACTGACCACTCGCAAGTTCTTTGAGGGTACAAGCTGG GAGTTTACCATGAATCCTGGACCTTTTAATATTAAGGAACATGTGCTGATCACAATATTTGCCAATTCGGGTGCTGGAACTGTTTATGCTACGCATATTC TCACTGCTGTTAAGCTATATTACAAGAGGAAACTGACTTTTGTTCCCGCCTTGTTTGTTATGATTACTACTCAGGTACTAGGATTTGGTTGGGCTGGTCT TTTCCGGAAATATTTGGTGGAGCCAGGGGAAATGTGGTGGCCATCTAATCTGGTTCAAGTGTCTTTGTTCAGGGCACTACATGAGAAAGAGAAAAGACTG AAAGGCTACACAAGTCGTACCCAGTTCTTTCTCCTAGTCATAATTTGCAGCTTTGCATACTATGTCTTGCCTGGTTATCTTTTCACCATGTTAACATCCT TCTCTTGGGTCTGTTGGCTTGGTTCCAAGTCTGTTCTGGTTCAGCAACTAGGTTCAGGCTTGCAAGGACTTGGAATAGGCGCTGTAGGGTTTGATTGGGC TACAGTTTCTGCTTATCTTGGAAGTCCACTAGCTAGTCCATGGTTTGCTACTGCCAATGTTGCAGTTGGATTTTCCCTAATAATGTATGTGATGACACCC ATCTGTTACTGGCTCAATGTCTACAATGCCAAGAACTTTCCATTATATTCAAATGAGCTTTTTACAGAAAAGGGTGAGGAGTACGACATCCTTAACATCA TCAATTCAAAGTTTCACCTGGATCGGGATGCTTATGCAAAGTTTGGGCCAATACACATGAGCACCTTCTTTTCTATGACTTATGGCCTTGGATTTGCCAC ACTTTCTGCTACTGTTATGCATGTCCTACTCTTTAATGGAAGTGACCTATGGAAGCAAAGCAAAAGGGCCTTTGGGGGCAGAAGGAAAATTGATATACAT ACAAGGCTCATGAAGAAATACAAATCAGTTCCCACATGGTGGTTCTACATCATCCTTGTCATAAACATTGCTGCTATAATCTTTGCTTGTGAGCATTACA ATGAATCACTTCAATTGCCTTGGTGGGGTGTTCTGCTAGCTTGTGCCATCGCATTTTTCTTCACTCTGCCAATCGGTATCATCAGTGCCACCACAAATCA GCAACCAGGTCTTAACGTTATCACGGAATACATTATAGGGTACATGTATCCAGAGCGGCCGGTTGCTAATATGTGCTTCAAGGTGTATGGATATATAAGC ATGACTCAAGCTCTAACGTTTCTAGCAGACTTTAAGCTAGGGCACTACATGAAAATTCCACCTAGATCAATGTTCATGGCACAGGTGGTAGGAACACTTG TGGCTGTACTCGTATACCTAGGAACTGCCTGGTGGATGATGGATGCCATTCCCAATCTTTGTAGTCAAGACAACGGCCCATGGAAATGCCCGATGGACAG GGTGTTTTTTGATGCTTCTGTCATATGGGGGCTGGTTGGACCGCGCAGAATCTTTGGCAACCTTGGCGAATATGGAGGTGTCAATTGGTTCTTTCTCGGT GGGGCTGTAGCTCCTCTCATAGTCTGGATTTTCCATAAAGCATTCCCAAGAAAGGAATGGATCAGCCTCATTCACATGCCAGTCCTGTTAGGTGCAACAT CAATGATGCCTCCAGCTTCTGCTGTGAACTACACCAGTTGGATTGTTGTTGGATTCCTCTCTGGATATGTTCTGTTCAGATATCGAACAGAATGGTGGAA ACGTTATAATTACGTGCTCTCTGGTGGCCTTGATGCCGGGACAGCCTTTATGACTCTGTTGATCTTTTTCGCTCTCGGATACTGGGATGTTGACCTGACA TGGTGGGGAAGCAATTCGAGCAACCCAGAAGGATGCCTCTTGGCTAGCTGTCCAACTGCCAAAGGGATCATTGTAGATGGCTGCCCAGTTCTCTGA
AA sequence Show only first row Show all	>Potri.012G019700.1 pacid=42782698 polypeptide=Potri.012G019700.1.p locus=Potri.012G019700 ID=Potri.012G019700.1.v4.1 annot-version=v4.1 MAGANEVQAMEIEDEEECPVKQVDLTVLKTDDPTLPVLTFRMWVLGLGSCVLLSFVNQFFWYRTQPMFISSISAQIAVVPLGHLMAKKLTTRKFFEGTSW EFTMNPGPFNIKEHVLITIFANSGAGTVYATHILTAVKLYYKRKLTFVPALFVMITTQVLGFGWAGLFRKYLVEPGEMWWPSNLVQVSLFRALHEKEKRL KGYTSRTQFFLLVIICSFAYYVLPGYLFTMLTSFSWVCWLGSKSVLVQQLGSGLQGLGIGAVGFDWATVSAYLGSPLASPWFATANVAVGFSLIMYVMTP ICYWLNVYNAKNFPLYSNELFTEKGEEYDILNIINSKFHLDRDAYAKFGPIHMSTFFSMTYGLGFATLSATVMHVLLFNGSDLWKQSKRAFGGRRKIDIH TRLMKKYKSVPTWWFYIILVINIAAIIFACEHYNESLQLPWWGVLLACAIAFFFTLPIGIISATTNQQPGLNVITEYIIGYMYPERPVANMCFKVYGYIS MTQALTFLADFKLGHYMKIPPRSMFMAQVVGTLVAVLVYLGTAWWMMDAIPNLCSQDNGPWKCPMDRVFFDASVIWGLVGPRRIFGNLGEYGGVNWFFLG GAVAPLIVWIFHKAFPRKEWISLIHMPVLLGATSMMPPASAVNYTSWIVVGFLSGYVLFRYRTEWWKRYNYVLSGGLDAGTAFMTLLIFFALGYWDVDLT WWGSNSSNPEGCLLASCPTAKGIIVDGCPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019700 [exp]	0	1
					Potri.001G399050 [exp]	10.81	0.7401
					Potri.017G071950 [exp]	15.58	0.7377
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156600 [exp]	16.97	0.6667
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156800 [exp]	17.88	0.6731
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.004G022700 [exp]	19.89	0.7177
AT1G15170			MATE efflux family protein (.1...		Potri.010G116900 [exp]	19.89	0.6057
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.014G156200 [exp]	23.55	0.6845
					Potri.010G084201 [exp]	26.00	0.7029
					Potri.011G097050 [exp]	26.26	0.4994
					Potri.003G032701 [exp]	28.91	0.6052

Compare expression of checked genes

Potri.012G019700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.