Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13810 309 / 2e-94 AtRLP47 receptor like protein 47 (.1.2) AT3G28890 309 / 2e-94 AtRLP43 receptor like protein 43 (.1.2) AT2G33060 297 / 6e-89 AtRLP27 receptor like protein 27 (.1) AT3G05660 293 / 4e-87 AtRLP33 receptor like protein 33 (.1) AT3G05360 278 / 2e-82 AtRLP30 receptor like protein 30 (.1) AT2G32660 273 / 3e-82 AtRLP22 receptor like protein 22 (.1) AT4G13880 275 / 2e-81 AtRLP48 receptor like protein 48 (.1) AT3G23120 273 / 2e-80 AtRLP38 receptor like protein 38 (.1) AT1G71400 271 / 4e-79 AtRLP12 receptor like protein 12 (.1) AT5G40170 270 / 6e-79 AtRLP54 receptor like protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G025300 [exp] 1258 / 0 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G009400 [exp] 1256 / 0 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.012G026600 [exp] 1229 / 0 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G020600 [exp] 851 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G008300 [exp] 848 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 843 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G026000 [exp] 810 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G025700 [exp] 764 / 0 AT1G71400 239 / 1e-68 receptor like protein 12 (.1) Potri.012G007932 [exp] 762 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 321 / 3e-97 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 285 / 7e-84 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10004313 [exp] 283 / 1e-83 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 286 / 5e-83 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 281 / 2e-81 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 278 / 4e-80 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004310 [exp] 273 / 5e-80 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10002214 [exp] 261 / 3e-78 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10011064 [exp] 268 / 4e-77 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 270 / 2e-76 AT3G11010 367 / 5e-110 receptor like protein 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G019850.1 pacid=42782640 polypeptide=Potri.012G019850.1.p locus=Potri.012G019850 ID=Potri.012G019850.1.v4.1 annot-version=v4.1 TTGTTTCTCTTGTATTTTCTTACAACAATTTCATCATCCTTCTCCTCAAATTTTTCCTCTTCTACTCAGTTGTGTAGTCATCACCAAGCTCTTTCTCTGC TTCAATTCAAACAATCTTTTTCCATTCAGAGGTCTCCTTTTTGGTTTGCTAGAAATTATCAATATGATCAATATCCCAAGACAGAGTCATGGAAAGAGGG TACAGACTGCTGCTTGTGGGATGGCGTCACTTGTGACCTGAAAACCGGGCAAGTGACTAAACTGGACCTCTCTTTCAGCATGTTTGGCCAGTTTTCCAAT TTGATGCATCTTAACCTAACTCATTCAAATTTTGCAGGCCAAGTTCCATCGGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATATCTCAAACAAAC ATCTAAGTCTAGAAACAGTCTCTTTTGCCAAGATTGTTCAAAACCTTACCAAGCTAAGAGTACTCTATTTGGATTATATAGATATGTCTTTGGTTGCACC TAATTCCTTAACAAATTTGTCCTCTTCCTTGACATTGCTTTCACTTGTGGGTTGTGGATTGCAAGCCAATGTGAGTAATGTCCTCTGGCAGTTGGAGCTT TCTGATACAAGAATTTCAGTTTATTTAGAAAATGACTTCATCAGTAAGCTCAAGTCGTTAGAATACATATGGCTTCGCAATTGTGACATTCGAAGGACAA ATGTAGCTCTGCTTGGTAATCTCACACAGCTTAGAATGTTAGATCTCTCACATAATAATTTGAGCGGTGAAATCCCATCATCATTTGAAAACCTTTCAAA TCTAGAGAGTCTATATTTATTTAGTAACTTATTCAATGGGACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTAGGTTATTTGGACCTTCATAACAAT CATTTCATAGGCCATATAAGTGAATTCCAACATAATTCGTTGGAATACCTTGATCTGAGCAATAATCACTTCCATGGTCCAGTCCCAAGCTCAATTTTCA AACAAGAGTATTTGGAAGTCCTTATTCTTGCGTCCAACAATAAACTGACAGGTGAGATTTCTTATTCTATATGCAAGCTGAAATACCTTGAAATCCTTGA CCTGTCCAACAACAGTCTGAGTGGTTCTATTCCACAATGTTTGAGCAACTTCAGCAACACTCTCTCAATTTTGCATTTAGGCATGAACAATCTTCAAGGC ACTATCTCTTTAGCATTCTCAGAGGGGAATAGCTTGGGATATCTCAGCCTCAATGACAACGAATTGGAAGGGGAAATACCATCATCTATCATCAATTGCA CAATGTTGGAAGTTCTTGATCTTGGCAACAATAAGATTAAGGATACATTCCCCCATTTCCTAGAAAGGCTTCCAAAGTTGCAGGTTCTTGTTCTAAAATC CAATAAACTCCAGGGTTCTGTGAAGGATCCGACTACTTATAATTCATTCTCTAAATTACAGATTTTTGACATCTCCAGCAATAATTTGAGTGGACCATTA CCAACAGGGTTTTTCAATAGTCTTGAAGCAATGATGACCTCGAATCAAAATATGATTTACATGACATCAAACAATTACTATGGTTTTGCCGATATTTATG CCTATTCCGTAGAAATGAAGTGGAAAGGATTGGAATTTGAGTTTGTAAAAATTCAAAGTATCCTCAGAGTACTTGATTTGTCAAGTAATAGTTTCACCGG TGAGATTCCAAAATTGATCGGAAAGCTTAAAGGACTCCAACAACTTAACCTCTCTCACAATTACTTTACTGGTCATATCCAATCATCATTGGGAATTTTG ACCAATCTAGAATCATTAGATCTATCTTCAAATTTGTTAACCGGAAGGATTCCTATACAGTTGGTAGATCTAACATTTCTCCAAGTCTTAGACCTTTCAC ATAACCGGCTTGAAGGACCCATACCCAAAGGAAAGCAGTTCAACACGTTTGATCATCGCTCATTCGAAGGAAACTCTGGTTTGTGTGGATTTCCAATGCC AGAAGAATGTAGCAATGGCGAGGCACCACCATTACCATCATCAAACTTTATTGTAGGAGATGATTCAACATTGCTTGAAGATGGGTTTGGATGGAAAGCT GTGGCAATTGGGTATGGATTTGGGTTTATGTTTGGAGTCATAATGGGATATGTTGTGTTTAAAACAAGAAGACCTGCATGGTTTCTGAAAATGGTTGAAG ATCAATGGAGTCTTAATGCAAGCAGAACAAAGAAGAATGCTAGTAGAAATGGTGCAAGAAGAAAATAA
AA sequence Show only first row Show all	>Potri.012G019850.1 pacid=42782640 polypeptide=Potri.012G019850.1.p locus=Potri.012G019850 ID=Potri.012G019850.1.v4.1 annot-version=v4.1 LFLLYFLTTISSSFSSNFSSSTQLCSHHQALSLLQFKQSFSIQRSPFWFARNYQYDQYPKTESWKEGTDCCLWDGVTCDLKTGQVTKLDLSFSMFGQFSN LMHLNLTHSNFAGQVPSEISHLSKLVSLDISNKHLSLETVSFAKIVQNLTKLRVLYLDYIDMSLVAPNSLTNLSSSLTLLSLVGCGLQANVSNVLWQLEL SDTRISVYLENDFISKLKSLEYIWLRNCDIRRTNVALLGNLTQLRMLDLSHNNLSGEIPSSFENLSNLESLYLFSNLFNGTIPSFLFALPSLGYLDLHNN HFIGHISEFQHNSLEYLDLSNNHFHGPVPSSIFKQEYLEVLILASNNKLTGEISYSICKLKYLEILDLSNNSLSGSIPQCLSNFSNTLSILHLGMNNLQG TISLAFSEGNSLGYLSLNDNELEGEIPSSIINCTMLEVLDLGNNKIKDTFPHFLERLPKLQVLVLKSNKLQGSVKDPTTYNSFSKLQIFDISSNNLSGPL PTGFFNSLEAMMTSNQNMIYMTSNNYYGFADIYAYSVEMKWKGLEFEFVKIQSILRVLDLSSNSFTGEIPKLIGKLKGLQQLNLSHNYFTGHIQSSLGIL TNLESLDLSSNLLTGRIPIQLVDLTFLQVLDLSHNRLEGPIPKGKQFNTFDHRSFEGNSGLCGFPMPEECSNGEAPPLPSSNFIVGDDSTLLEDGFGWKA VAIGYGFGFMFGVIMGYVVFKTRRPAWFLKMVEDQWSLNASRTKKNASRNGARRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13810		AtRLP47	receptor like protein 47 (.1.2...		Potri.012G019850 [exp]	0	1
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G026600 [exp]	1.00	0.8307
AT2G21120			Protein of unknown function (D...		Potri.004G168900 [exp]	12.48	0.6487
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	14.49	0.7191
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	14.69	0.6975	Pt-ACA1.1
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	17.20	0.6785
AT5G36930			Disease resistance protein (TI...		Potri.004G230000 [exp]	18.11	0.7362
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	22.71	0.6805
AT3G19240			Vacuolar import/degradation, V...		Potri.009G102000 [exp]	23.64	0.6456
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	24.97	0.6355
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G009400 [exp]	43.12	0.6281

Compare expression of checked genes

Potri.012G019850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.