Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 205 / 7e-55 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 191 / 4e-50 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 159 / 1e-39 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT3G46510 100 / 2e-21 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 96 / 7e-20 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 88 / 1e-17 PUB15 Plant U-Box 15 (.1) AT1G71020 87 / 2e-17 ARM repeat superfamily protein (.1.2) AT3G54850 84 / 2e-16 ATPUB14 plant U-box 14 (.1) AT1G23030 79 / 1e-14 PUB11 ARM repeat superfamily protein (.1) AT1G60190 79 / 1e-14 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175800 [exp] 1128 / 0 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 1097 / 0 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 380 / 2e-115 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 325 / 6e-97 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 316 / 1e-93 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 258 / 1e-71 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G007800 [exp] 229 / 4e-63 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 223 / 7e-61 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 192 / 7e-50 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005988 [exp] 1018 / 0 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 546 / 2e-179 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 343 / 4e-101 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 275 / 6e-79 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 268 / 3e-76 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 226 / 7e-61 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 162 / 2e-40 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 155 / 3e-38 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 143 / 4e-35 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 135 / 5e-32 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.012G019900.6 pacid=42784153 polypeptide=Potri.012G019900.6.p locus=Potri.012G019900 ID=Potri.012G019900.6.v4.1 annot-version=v4.1 ATGGCAAGGGAAGTTATTGTCAATGCATCAATCGTTTCAGTATCGGAGTTGCTTTCACATACTGTAGTTTCCATATTTGACACAGTACATGCAGCCAAAG AAGTGCTCATTCAAAAGGAGAATTTCAAGAGATTTTTGACGTACTTGGAGAAGACAGCATATTTCTTGAAAGATTTAGCAAGGTTCAACCTAGACCATTC TGAGAACTTGAATAATGCTGTAGAGATTCTAAATAGTGAGACTAAAGTTGCTAAGAGGCTAGCTGTTGAGTGCAGCAACAAGAACAAGGTCTATCTCTTA CTGAATTGTCGAAAAATTGTTAAGCATTTAGAGGCGTGCACGAAAGAGATCGGTCGTGCCTTGAGTCTCATACCTCTTGCCTCTTTAGATGTTTCATTGG GTGTAAGTAATGAAATCAGCAAGCTATGCAAGAATATGCTGGATGCAGAATATCGAGCAGCAGGATTGGAGGAGGAAGTCTTGGGAAAGATTGAGTGGGC AATAAAGGAGGGAAATGTGGATGAATCTTATGCAAACAATTTATTGGCTAGTATTGCTGAAGCTGTTGGGATCTCTGGTGATCGGTCAGCTTTGAAGAGG GAGTTTGAAGAATTCAAGAACGAAATTGAAAATTTCAAGCTAAGAAAGGACATGGCAGAAGCTATACAGATGGAGCAGATCAGTTCGTTTCTTGGAAAGG CTGATGCCACTACATCTTATGAGGAGCGAGAAAGGAAGTACCTTGACAAGAGAAATTCTCTGGGTAGACAAACTTTGGAACCTCTCCATTCATTCTTCTG TCCAATTACTCAGGATGTAATGGTTGATCCTGTGGAAACTTCCTCTGCTAAAACATTCGAGAGAAGTGCAATAGAAAAATGGTTTGCAGAAGGGCACAAC CTTTGTCCCATGACCTGCACTACCTTAGACACTTCGGTTTTACGACCTAACGTAACTCTTCGTAGATCGATTGAGGAATGGAAGGAAAGAAACAACTTGG TTATCATTGTTTCCATTAAACAAAAACTTCAATCAAATGAAGACCAAGAAGTTCTTCAATCATTGGGCAAGCTGCAAGATCTGATGGCAGAACGAGAGAT GCACCAAGAATGGGTGATGTTGGAGAACTATGTGCCAGTTCTTACTGGACTTCTTGGTGAGAGAAATCGTGAAATAAGAATCCATACTCTGTCCATCCTT TGCATCCTTGCAAAGGGCAGTGACCACAATAAGGAAAAAATTGCTGAAGTAGATCATGCACTTGAATTTATTGTTCGGTCGCTTGCACGCCAGATTGGGG AAAGAAAGTTAGCCTTGCAGTTGTTACTTGAACTATCAAGAAACAATGCGGTGCGAGATTTAATCGGAAATATTCAGGCCTGTATTTTTCTCCTAGTGAC CACATTAAACAGTGAGGAAGTTGAAGCTGCCAGAGATGCAGGAGAGCTTTTGGAGAATCTGTCTTTCCTTGATCAAAATGTTATACAGATGGCAAAGGCT AACTATTTTAAGCCACTACTGCGGCTTCTTTCTTCAGGGCCAGAAAATGTTAGAATGGTCATGGCTGAGACATTAGCAGAAATTGATTTGACTGATCACA ATAAATTATCCTTGTTTAAATATGGGGCACTAGAGCCTCTTCTTCGATTTCTCTCGAATGATGATTTAGAAGTGAAAAAAGTGGCTGTTAAAGCTCTTCA GAACCTTTCAAATGTACCAGAAAATGGTCTTCAGATGATCAGAGAAGGTGCAGTTGGACCTCTGTTTGAAATTCTTTATCGACACAGCTTATCATCACCA AGTTTGCGCGAGCATGTTGCAGCCATAATTATGAACCTTGCCATAGCAACTACTTGCCAAGAAGCTGATCATGAGCAGATCTCATTACTGGAATCTGAGG AAGATATTTTTAAGCTCTTCTGTCTAATTTCCTTGACGGGTCCGGAGATTCAGAAGACCATTCTTCGAACTTTTCTTGCAATGTGCCAATCTCCTTCCGG TGTAGAAATAAGAGCAAAACTGAGACAGCTCTCTGCTGTCCAAGTATTGGTTCAATTATGTGAGCATGATCATAGTATAGTACGGGCAAATGCCATGAAG CTATTCTGCTGCTTGACAGAAGATGGTGATAACAACATCATTTTGGAACATGTGGGTCAAAGATGCATTGAGACCCTGGTCAAGGTCATTATGGCATCAA CTGATGTGGAGGAGATTGCTGCAGCCATGGGTATTATTTCTAATCTTCCTGATGACCCAAATATAACTTTGTGGCTTGTAGATGCTGGGGCAGTTCAGGT CATTTCTACCTGTCTCACTGATGAGAGCAGAAATGCCTCACACAGAAAGCAGATAACAGAGAATGCCATTAAAGCTCTTTGTCGTTTCACTGAGAATCAG GAGTGGCAGAAGAGAGTAGCCAAAGTTGGAATTATTCCGGTGCTTGTACAATTACTGGTTTCTGGAACTGCTTTGATGAAACAAAGTGCTGCCATTTCAC TTAAACAGCTTTCTGAAAGTTCAAGTTCCTTAAGCAGCCCGGTGAAAAAACGTGGTCTTTTCTCCTGCTTGGCTGCACCAGTCACATGCTGCCCTGTACA TCTGGGAATTTGTACAGTGGAATCTTCCTTCTGCATTTTAGAGGCTAATGCACTGGAACCCCTGGTGAGGATGCTTGGAGAAGCTGATCTTGGAGTCTGT GAAGCTTCATTAGATGCACTCCTGACATTGATCGATGGACAAAAACTACAAAGTGGTAGTAAGGTGCTTGCTGAAGCAAATGCCATTGTTCAAATTATAA AGCTATTGAACTCACCTTCTGCCAGGGTGCAGGAGAAAACACTGGGAGCTTTAGAGCGAATCTTTCGACTATTTGAATTCAAGCAAAAATATGGAAATTC AGCGAAGATGTCATTAGTTGATATAACACAAAGGGGAAGCAGTAGCATGAAATCCCAAGCTGCTAAATTACTTGCTCAATTGAATGTTCTTAATGAACAA TCCTCTTATTTCTGA
AA sequence Show only first row Show all	>Potri.012G019900.6 pacid=42784153 polypeptide=Potri.012G019900.6.p locus=Potri.012G019900 ID=Potri.012G019900.6.v4.1 annot-version=v4.1 MAREVIVNASIVSVSELLSHTVVSIFDTVHAAKEVLIQKENFKRFLTYLEKTAYFLKDLARFNLDHSENLNNAVEILNSETKVAKRLAVECSNKNKVYLL LNCRKIVKHLEACTKEIGRALSLIPLASLDVSLGVSNEISKLCKNMLDAEYRAAGLEEEVLGKIEWAIKEGNVDESYANNLLASIAEAVGISGDRSALKR EFEEFKNEIENFKLRKDMAEAIQMEQISSFLGKADATTSYEERERKYLDKRNSLGRQTLEPLHSFFCPITQDVMVDPVETSSAKTFERSAIEKWFAEGHN LCPMTCTTLDTSVLRPNVTLRRSIEEWKERNNLVIIVSIKQKLQSNEDQEVLQSLGKLQDLMAEREMHQEWVMLENYVPVLTGLLGERNREIRIHTLSIL CILAKGSDHNKEKIAEVDHALEFIVRSLARQIGERKLALQLLLELSRNNAVRDLIGNIQACIFLLVTTLNSEEVEAARDAGELLENLSFLDQNVIQMAKA NYFKPLLRLLSSGPENVRMVMAETLAEIDLTDHNKLSLFKYGALEPLLRFLSNDDLEVKKVAVKALQNLSNVPENGLQMIREGAVGPLFEILYRHSLSSP SLREHVAAIIMNLAIATTCQEADHEQISLLESEEDIFKLFCLISLTGPEIQKTILRTFLAMCQSPSGVEIRAKLRQLSAVQVLVQLCEHDHSIVRANAMK LFCCLTEDGDNNIILEHVGQRCIETLVKVIMASTDVEEIAAAMGIISNLPDDPNITLWLVDAGAVQVISTCLTDESRNASHRKQITENAIKALCRFTENQ EWQKRVAKVGIIPVLVQLLVSGTALMKQSAAISLKQLSESSSSLSSPVKKRGLFSCLAAPVTCCPVHLGICTVESSFCILEANALEPLVRMLGEADLGVC EASLDALLTLIDGQKLQSGSKVLAEANAIVQIIKLLNSPSARVQEKTLGALERIFRLFEFKQKYGNSAKMSLVDITQRGSSSMKSQAAKLLAQLNVLNEQ SSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	1.41	0.9325
AT1G01490			Heavy metal transport/detoxifi...		Potri.008G220100 [exp]	2.00	0.9196
AT3G10260			Reticulon family protein (.1.2...		Potri.002G055600 [exp]	3.31	0.8665
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	4.00	0.8724
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	5.29	0.8848
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	6.32	0.8824
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	7.34	0.8742
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	8.12	0.8882	Pt-ATCNGC19.3
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020800 [exp]	11.04	0.8212
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	11.22	0.8734

Compare expression of checked genes

Potri.012G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.