Plant FIBer expression Database

Potri.012G020100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24400 229 / 7e-75 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT5G24410 189 / 1e-59 PGL4 6-phosphogluconolactonase 4 (.1)
AT3G49360 183 / 1e-57 PGL2 6-phosphogluconolactonase 2 (.1)
AT5G24420 172 / 2e-53 PGL5 6-phosphogluconolactonase 5 (.1)
AT1G13700 150 / 9e-45 PGL1 6-phosphogluconolactonase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G007200
[exp]
315 / 1e-108 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Potri.012G024400
[exp]
315 / 1e-108 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Potri.015G007300
[exp]
276 / 2e-94 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Potri.010G157200
[exp]
174 / 6e-54 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
Potri.008G097200
[exp]
164 / 2e-49 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1)
Potri.015G008401
[exp]
61 / 2e-12 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022352
[exp]
273 / 1e-91 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Lus10036919
[exp]
189 / 7e-60 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
Lus10037065
[exp]
188 / 3e-59 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0246 ISOCOT_Fold PF01182 Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence
>Potri.012G020100.1 pacid=42783682 polypeptide=Potri.012G020102.1.p locus=Potri.012G020100 ID=Potri.012G020100.1.v4.1 annot-version=v4.1
ATGGCCACGTCATCTCTCAACTTCTCTCCGTACATTCCCGTTTTCAGCCGCATCCGGTCAGCAACATCATCATCGTTAATGGACGCTGCTAATAACAAGG
TGGTAGAGGTGTTTGATACAGAGGAGGACTGTCAGTGTCTCTTGCGAAATACACAGCAGGTTTATCGGACAAGTTTGACAAAAGAAAGAGGGTCTTTCAC
TGTCGTTTTGTCAGTGGGTTTGATAGATTGGTCGAAATGGCATGTCTTTTGGGTGGATGAGAGACTTGTTCCTAAAGATCATCCTGACAGTAACTATAAA
CTTGCTTTTGATGGTTTTCTGTCCATGGGTGCAGTTGATGACTATAAGACCTGTCTCAAACATTTGGTTCATACTGGTGTGATAGAGAAATCTTCAGTGA
GTGGGTTCCCAAAGTTTGATCTAATGCTTATCAGCATGGGTCCGGATGGGCATGTAGCTTCTCTTTTCCCAGGGCATTCGCTCCTCAAAGAAAATCAGAA
ATGGGTTACTCACATCACAGACTCTCCAAAACCACCTCCAAAGAGAAGTACCTTTACTTTCCCTGTGATCAATTCTTCTTCATATATTGCACTTCTGGTG
TGTGGTGCTGGTAAAGCTGATGTGCTGCAATCAGCAGTGGGAAATGGTAAGAATTCTGATATGTTGCCTGTACAAACGGTTTCACCTGAAGGGGAGTTTT
AG
AA sequence
>Potri.012G020100.1 pacid=42783682 polypeptide=Potri.012G020102.1.p locus=Potri.012G020100 ID=Potri.012G020100.1.v4.1 annot-version=v4.1
MATSSLNFSPYIPVFSRIRSATSSSLMDAANNKVVEVFDTEEDCQCLLRNTQQVYRTSLTKERGSFTVVLSVGLIDWSKWHVFWVDERLVPKDHPDSNYK
LAFDGFLSMGAVDDYKTCLKHLVHTGVIEKSSVSGFPKFDLMLISMGPDGHVASLFPGHSLLKENQKWVTHITDSPKPPPKRSTFTFPVINSSSYIALLV
CGAGKADVLQSAVGNGKNSDMLPVQTVSPEGEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24400 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, E... Potri.012G020100
[exp]
0 1
AT3G55160 unknown protein Potri.004G128601
[exp]
19.28 0.6318
AT3G55550 Concanavalin A-like lectin pro... Potri.016G101000
[exp]
19.44 0.6094 Pt-LECRK7.1
AT3G14120 unknown protein Potri.001G165900
[exp]
24.18 0.6357
AT4G22030 F-box family protein with a do... Potri.011G007000
[exp]
29.17 0.5787
AT1G63810 unknown protein Potri.007G024600
[exp]
38.67 0.6063
AT3G12010 unknown protein Potri.006G195000
[exp]
41.23 0.5351
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.004G177700
[exp]
51.61 0.5982
AT5G49830 EXO84B exocyst complex component 84B ... Potri.008G009100
[exp]
52.04 0.5799
AT2G31660 EMA1, URM9, SAD... UNARMED 9, SUPER SENSITIVE TO ... Potri.002G232600
[exp]
55.13 0.5856
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.001G437500
[exp]
57.79 0.5819

Potri.012G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.