Plant FIBer expression Database

Potri.012G020400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G008200
[exp]
550 / 0 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G020400.2 pacid=42783103 polypeptide=Potri.012G020400.2.p locus=Potri.012G020400 ID=Potri.012G020400.2.v4.1 annot-version=v4.1
ATGAGAGCAAAACAAGAACAGCCCATGATCAGCAACGAAGCCAAGAAGACAAGGGATCAGCCAAATCTGACAGAATGTCAGTCTTGTGGTCTCCGCATCT
CCTCCCATAAAAGACTCGAAATTTTATACAGTGAGTGGCGAATCATCCTTCTTTGTACAAAATGTTTTAATCTTGTTGAGTCTTCCAGGATTTGCTCTTA
TTGTTTCAGACAATCATCTGATAAGACTAAGTGTTTTCGTTGTTGCCAATGTAAGAGGGTTGTTCATAAATCTTGTTTTGCAAAACGTAAGGCTGTCACC
CCTTGGTCGTATTCTAGTTGTGATGGTGGTGGTGATTTTTCTGTTTGTATAGATTGTTGGGTGCCTAATTCGGTTGCTAGTAAGAGGGGGGGAGTTTGTA
GGGATAGCAAGAGGAATAGTGGTAGGGTTTTGGGTAGAAGTTTGGAGGATGCTAATTGTGTGGTACAGGAGAAGGTTGAGGCTGCGGTTAGGGCTAGGGA
TTTGGCTGTGAGGAAGGCGTTGGAGGAGAGGAATGCGGCGGATGTGGCCAGGAAAGCATTGGATATGGTGGCTAATAACGGGGTTGTTAAGGAGAATAAT
GATGTTGATGATTTTGAATTGGCGTTTCGGTTGCATCGAGCAATAAATAGCTCGCCCCGGATATCGAGTAATTTGTGCATGGTTAATTCAAGTTGTTTGG
GTGTTGCTAGGAGAGGGGAGGGTAATGGTCAAACGCGGATTAGAAATTCTGATTTTAGGAATCCCATTGCTTGTGGAAAGCTTGATGATTTTCTGAGTAA
AAGTGTGGACGTGGAGTGTCGGAAATCGAATGGAATTGGTGATGGTAAAATCAGACCTAATGCTAAGAAAGATGGAAATGCGGGCAAGTGTTCGAAGATG
GGAGAACAGAGCTTTTTCAGCAAATTGATAGACTCAAGGGGGAATGACCATAGTGTGAACTCTGGTTCTCAATCTTTTAGGGAACGAAATGAATCTATGA
CACCTGATGATAAAAGTTGCAAGGGAAAGAGTGATCGCTATCTGCTGAAGTATAGTAGGAGAAAGTTAGATGAGAGGATAATTCCAGATGGTGGACCCAA
GTTCCTCTATGAAGGCTTGCACTCAGGACTTGCACCTCAGCAATGGAACAGCTGCTAA
AA sequence
>Potri.012G020400.2 pacid=42783103 polypeptide=Potri.012G020400.2.p locus=Potri.012G020400 ID=Potri.012G020400.2.v4.1 annot-version=v4.1
MRAKQEQPMISNEAKKTRDQPNLTECQSCGLRISSHKRLEILYSEWRIILLCTKCFNLVESSRICSYCFRQSSDKTKCFRCCQCKRVVHKSCFAKRKAVT
PWSYSSCDGGGDFSVCIDCWVPNSVASKRGGVCRDSKRNSGRVLGRSLEDANCVVQEKVEAAVRARDLAVRKALEERNAADVARKALDMVANNGVVKENN
DVDDFELAFRLHRAINSSPRISSNLCMVNSSCLGVARRGEGNGQTRIRNSDFRNPIACGKLDDFLSKSVDVECRKSNGIGDGKIRPNAKKDGNAGKCSKM
GEQSFFSKLIDSRGNDHSVNSGSQSFRERNESMTPDDKSCKGKSDRYLLKYSRRKLDERIIPDGGPKFLYEGLHSGLAPQQWNSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G020400
[exp]
0 1
AT5G43490 unknown protein Potri.001G319600
[exp]
14.56 0.7525
AT5G53930 unknown protein Potri.011G115900
[exp]
15.19 0.7344
AT2G32910 DCD (Development and Cell Deat... Potri.013G029200
[exp]
15.81 0.6711
AT1G49520 SWIB complex BAF60b domain-con... Potri.009G106700
[exp]
18.76 0.7461
AT2G46040 ARID ARID/BRIGHT DNA-binding domain... Potri.014G086700
[exp]
24.24 0.6866
AT1G55535 unknown protein Potri.001G001400
[exp]
26.83 0.6920
AT2G26850 F-box family protein (.1) Potri.006G040000
[exp]
27.16 0.6823
AT3G54390 Trihelix sequence-specific DNA binding ... Potri.003G195300
[exp]
29.12 0.6392
AT4G36520 Chaperone DnaJ-domain superfam... Potri.005G229300
[exp]
29.86 0.7262
AT1G59820 ALA3 aminophospholipid ATPase 3 (.1... Potri.010G039900
[exp]
36.66 0.6528 ALA3.3

Potri.012G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.