Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27720 761 / 0 Major facilitator superfamily protein (.1) AT3G49310 747 / 0 Major facilitator superfamily protein (.1) AT1G64650 741 / 0 Major facilitator superfamily protein (.1.2) AT2G23093 78 / 2e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G008100 [exp] 802 / 0 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.003G145600 [exp] 732 / 0 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G085032 [exp] 138 / 9e-40 AT1G64650 145 / 4e-43 Major facilitator superfamily protein (.1.2) Potri.007G052700 [exp] 88 / 1e-18 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033228 [exp] 728 / 0 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10003219 [exp] 687 / 0 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 674 / 0 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10000337 [exp] 276 / 8e-92 AT1G64650 308 / 2e-105 Major facilitator superfamily protein (.1.2) Lus10000336 [exp] 158 / 8e-45 AT1G64650 170 / 1e-52 Major facilitator superfamily protein (.1.2) Lus10011083 [exp] 100 / 1e-22 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1) Lus10014854 [exp] 97 / 2e-21 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF05631 [poplar] [flax] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Potri.012G020500.1 pacid=42783033 polypeptide=Potri.012G020500.1.p locus=Potri.012G020500 ID=Potri.012G020500.1.v4.1 annot-version=v4.1 ATGGAAGCTTTTTACTATTTGGTTTTTGGGGCATTAAGTGCTGTAGTTTTAGGAATTGAGCTAAGCAAGACAACAAAAGATCGAATCAATACATCTCCTG CTTTCAATTCTTTCAAGAACAATTACCTTGTTGTTTACTCTCTTATGATGGCTGGTGATTGGTTGCAAGGTCCATATGTTTACTTCCTTTACACTACATA CGGCTTTGGGAAAGGGGATATTGGGCAGCTGTTTATTGCTGGTTTCGGGTCCTCCATGCTGTTTGGGACAATTGTTGGATCGTTGGCTGATAAACAGGGT CGAAGGAGGGCATGTGTGACTTATTGCATTACCTATATACTGAGCTGCATTACCAAGCATTCTCCTCAGTACAGAATTTTAATGATAGGCCGTATCTTGG GAGGTATCGCCACTTCTCTCTTATTTTCATCATTTGAGTCATGGCTGGTTGCGGAACACAATAAGAGGGGCTTTGAGCAACAATGGCTATCACTGACATT TTCAAAGGCGATTTTTCTGGGAAATGGTCTTGTGGCAATTTTGTCTGGATTGTTTGGAAACCTTCTTGTAGATACATTTCAACTTGGTCCTGTGGCTCCT TTTGATGCTGCTGCATGCTTTCTTGCAATTGGAATGGCTATTATTATGTCATCATGGTCAGAGAACTATGGAGATCCTTCAGAGAACAAGGACTTGCTTG CCCAATTTAGGGGTGCTGCTGTGGCCATTGCTTCTGATGAAAAAATTGCTTTGCTGGGTGCCATTCAGTCTCTGTTTGAAGGTTCTATGTATACCTTTGT GTTCCTTTGGACACCAGCTTTGAGCCCAAATGATGAAGAGATTCCTCACGGATTTATTTTTGCTACATTCATGTTGGCCTCAATGTTGGGAAGCTCTCTT GCATCTCGGTTGATGGCCCGCTCATCACCCAGAGTAGAGAGCTACATGCAGATTGTTTTTGTTGTTTCATCAGCCTCTCTTTTGCTTCCTATTGTATCCA GTTTCTTAGTGCCGCCACCTAAAGAGAAAGCTGAAGGCATCTCATTCTCAAGCTGTCTCCAGATACTCGGCTTCTGTACCTTTGAGGCTTGTGTAGGGAT ATTCTGGCCTTCCATTATGAAGATGAGGTCCCAATACATTCCTGAGGAGGCCAGGAGCACCATTATGAACTTCTTCCGCATTCCACTCAATATCTTTGTG TGCATTGTTCTGTACAATGTTAATGCTTTCCCTATCACCATTATGTTCGGCATGTGCTCGATTTTCCTCTTTGTGGCATCCATCTTGCAGAGGAGGCTCA TGATGATTGCGGACAAGACAAAGACAGAAGAGCGGTCGATGAAGGAAAGGGATACCGAGGCAGAGCCTCTAAACATCTGA
AA sequence Show only first row Show all	>Potri.012G020500.1 pacid=42783033 polypeptide=Potri.012G020500.1.p locus=Potri.012G020500 ID=Potri.012G020500.1.v4.1 annot-version=v4.1 MEAFYYLVFGALSAVVLGIELSKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYVYFLYTTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQG RRRACVTYCITYILSCITKHSPQYRILMIGRILGGIATSLLFSSFESWLVAEHNKRGFEQQWLSLTFSKAIFLGNGLVAILSGLFGNLLVDTFQLGPVAP FDAAACFLAIGMAIIMSSWSENYGDPSENKDLLAQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL ASRLMARSSPRVESYMQIVFVVSSASLLLPIVSSFLVPPPKEKAEGISFSSCLQILGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFV CIVLYNVNAFPITIMFGMCSIFLFVASILQRRLMMIADKTKTEERSMKERDTEAEPLNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	0	1
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	2.82	0.8171
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	8.30	0.8487	UBP20.1
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.005G226000 [exp]	12.72	0.7788
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	15.36	0.7002
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	18.24	0.7628
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	18.33	0.8046
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Potri.011G145300 [exp]	18.65	0.7109
AT3G11800			unknown protein		Potri.004G146800 [exp]	21.35	0.7010
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.001G131400 [exp]	22.58	0.7936
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	40.18	0.7811

Compare expression of checked genes

Potri.012G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.