Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05660 372 / 1e-115 AtRLP33 receptor like protein 33 (.1) AT3G05650 370 / 7e-115 AtRLP32 receptor like protein 32 (.1) AT1G71400 369 / 8e-115 AtRLP12 receptor like protein 12 (.1) AT2G33060 363 / 5e-113 AtRLP27 receptor like protein 27 (.1) AT4G13810 352 / 1e-109 AtRLP47 receptor like protein 47 (.1.2) AT2G33050 351 / 2e-108 AtRLP26 receptor like protein 26 (.1) AT3G05360 350 / 5e-108 AtRLP30 receptor like protein 30 (.1) AT5G40170 345 / 2e-106 AtRLP54 receptor like protein 54 (.1) AT1G71390 344 / 5e-106 AtRLP11 receptor like protein 11 (.1) AT2G33020 342 / 2e-104 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055000 [exp] 1030 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G008300 [exp] 1024 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 1020 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G026000 [exp] 1006 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G026600 [exp] 998 / 0 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G025300 [exp] 986 / 0 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G009400 [exp] 985 / 0 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.012G027400 [exp] 893 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G028101 [exp] 888 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 404 / 1e-127 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 388 / 1e-121 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 325 / 5e-98 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10026415 [exp] 315 / 1e-92 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 313 / 2e-92 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10004310 [exp] 303 / 3e-90 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10006825 [exp] 300 / 3e-87 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10042239 [exp] 297 / 3e-86 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10016402 [exp] 285 / 7e-85 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10011039 [exp] 297 / 9e-85 AT3G11010 367 / 5e-110 receptor like protein 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G020600.1 pacid=42783842 polypeptide=Potri.012G020600.1.p locus=Potri.012G020600 ID=Potri.012G020600.1.v4.1 annot-version=v4.1 ATGAAGTTTTCATTATCCCTCTCTCAATTTCTCTGTTCCATTTTGTTTCTCTTCCATTTTCATACAACAATTTCATCATCATTCTCCTTAAATCACTCCT CTTCTAATCATTTGTGTGCTCATCACCAAAGTCTTTCTCTCCTTCAATTCAAACAATCCTTTTCCATTAAGAGTTCTGCTTATTGGGAGGATTGCCAACC CAAGACAGAGTCATGGAAAGACGGTACAGATTGCTGCTTGTGGGATGGGGTCACTTGTGATATGAAAACCGGGCAAGTCACTGGACTGAACCTCTCTTGC AGTATGCTTTATGGCACCCTCCATTCCAATAATTCTCTCTTCTCTCTTCATCATCTTCAGAAGCTCGATCTCTCTTTCAATGATTTCAACTCCTCCCATA TTTCTTCTCGATTTGGCCAGTTTTCCAATCTGACACATCTTAATCTAAATTATTCCAATTTCGCAGGCCAAGTTCCATTAGAAGTCTCCCGTCTCTCCAA ATTGATTTCTCTTAATCTCTCTGGAAACAACCATCTAAGTGTAGAACCAGTTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTAAGAGATCTCGAT TTGAGTTCTGTAAATATGTCTTTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTGTCATCTCTTTACCTTTGGGGTTGCGGATTGCAAGGGA AAATCCCGGGTAATATCTTTCTCCTACCAAACCTTGAATTACTCATTCTGCGAGACAATGAAGGCCTCACTGGCTCTTTTCCTTCCTCCAATGTGAGTAA TGTCCTCTGGCTGTTGGACCTTTCTGATACAAGAATTTCAATTTATCTAGAAAATGACTCCATCAGTAATTTAAAGTCGTTAGAGTATATGTTACTTAGT AATTGTAACATTGTTGGGTCAAAACTAGCTCTGTTTGGTAATCTTACACGGCTCTTTCAATTAGACCTCACAAACAACAATTTTAGTAGACAGATTCCAT CTTCATTTGGAAACCTTGTGCAGCTTCGTTACTTGGATCTCAGTTCCAATAATTTTATGGGTCAGATTCCAGATTTTTTCGCTAACCTAACCCTGCTCGC AGATTTAGATTTATCAAACAATCAACTCAATGGGACGATACCATCCTTTTTATTTGCTCTCCCTTCTTTATGGAATTTGGACCTTCATAATAATCAATTC ATAGGCAATATAGGTGAATTCCAACACAATTCATTGCAATACCTTGATTTGAGCAAAAACTCCTTGCATGGTCCAATCCCAAGTTCAATTTTCAATCAAG AGAACTTGGTAGTTCTTATTCTTGCATCCAACAGTAACTTGACATGGGAGGTTCCTTCTTCAATTTGCAAGTTAAAATTCCTGCGAGTCCTGGACCTTTC CAACAATGACTTGAGTGGTTCTGCACCACAATGTTTGGGAAACTTCAGCAACAGACTCTCAATTTTGGATCTAGGCATGAACAATCTCCGAGGCACTATT CCATCAACATTTTCAGAGGGAAGTAACTTGGAATATCTCAACCTCAATGGCAATGAATTAGAAGGGAAAATACCGATGTCTATTGTCAAGTGCACAATGC TGAAGTTTCTTAATCTTGGTAACAATAAGATTGAGGATACATTCCCCTATTTCCTAGGAATGCTTCCGGAGCTAAAGATTCTTGTTCTAAAATCCAATAA ACTCCAAGGTTTTATGAAGGGTCCGACTACTTTTAATTCCTTCTCCGCATTACGTATTCTTGACATCTCTGGAAATAATTTGAGTGGATCATTACCAGAA GAGTTTTTCAATAGTCTTGAAGGAATGATGACTGTCGATCAAGATATGATTTACATGACGGCAAGAACTTACTCTGGCTACACCTATTCAATAAAAATGA CATGGAAAGGGTTGGAAATTGAATTTGTGAAAATCCGAAGTTTCTTCAGATTATTTGATTTATCAAACAACAGTTTCACCGGTGAGATTCCAGAACTAAT TGGAAAGCTTGAAGGACTTCAACAACTTAACCTCTCTCACAATTCCCTTACAGGCCATATCCAATCATCATTACGGTTTTTAACCAATCTAGAGTCATTA GATATGTCTTCAAATATGCTTACGGGAAGGATTCCTGTGCAGTTGACAGATCTAACATTTCTTGCAATCTTAAACCTTTCACAAAACAAACTCGAGGGGC CCATACCTGTTGGGATGCAGTTCAACACGTTTGATGCAAGCTCATTTCAAGGAAACTTGGGTTTATGTGGAATCCAAGTGCTAACAGAATGCAACAATGG CGCGGTACCACCATTACCGCCATTAAACTTTAATGAAGAAGATGGGTTTGGATGGAAAGTTGTGGCAATGGGGTATGGATGTGGGTTTGTATTTGGAGTC ACAATGGGTTATATTGTGTTTAGAACAAGACGACCTGCATGGTTTCATAGCATGGTTGAACGTCAATGGAATCTGAAGGCAGGAAGAACAAAGAAGAATG CTCGCATACATGGTGCAAGAAGAAATTAA
AA sequence Show only first row Show all	>Potri.012G020600.1 pacid=42783842 polypeptide=Potri.012G020600.1.p locus=Potri.012G020600 ID=Potri.012G020600.1.v4.1 annot-version=v4.1 MKFSLSLSQFLCSILFLFHFHTTISSSFSLNHSSSNHLCAHHQSLSLLQFKQSFSIKSSAYWEDCQPKTESWKDGTDCCLWDGVTCDMKTGQVTGLNLSC SMLYGTLHSNNSLFSLHHLQKLDLSFNDFNSSHISSRFGQFSNLTHLNLNYSNFAGQVPLEVSRLSKLISLNLSGNNHLSVEPVSFDKLVRNLTKLRDLD LSSVNMSLVAPNSLTNLSSSLSSLYLWGCGLQGKIPGNIFLLPNLELLILRDNEGLTGSFPSSNVSNVLWLLDLSDTRISIYLENDSISNLKSLEYMLLS NCNIVGSKLALFGNLTRLFQLDLTNNNFSRQIPSSFGNLVQLRYLDLSSNNFMGQIPDFFANLTLLADLDLSNNQLNGTIPSFLFALPSLWNLDLHNNQF IGNIGEFQHNSLQYLDLSKNSLHGPIPSSIFNQENLVVLILASNSNLTWEVPSSICKLKFLRVLDLSNNDLSGSAPQCLGNFSNRLSILDLGMNNLRGTI PSTFSEGSNLEYLNLNGNELEGKIPMSIVKCTMLKFLNLGNNKIEDTFPYFLGMLPELKILVLKSNKLQGFMKGPTTFNSFSALRILDISGNNLSGSLPE EFFNSLEGMMTVDQDMIYMTARTYSGYTYSIKMTWKGLEIEFVKIRSFFRLFDLSNNSFTGEIPELIGKLEGLQQLNLSHNSLTGHIQSSLRFLTNLESL DMSSNMLTGRIPVQLTDLTFLAILNLSQNKLEGPIPVGMQFNTFDASSFQGNLGLCGIQVLTECNNGAVPPLPPLNFNEEDGFGWKVVAMGYGCGFVFGV TMGYIVFRTRRPAWFHSMVERQWNLKAGRTKKNARIHGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	8.00	0.9665
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.005G007900 [exp]	8.06	0.9616
AT4G03230			S-locus lectin protein kinase ...		Potri.019G120000 [exp]	8.94	0.9523
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141450 [exp]	10.58	0.9651
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	10.67	0.9614
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	10.95	0.9240
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	12.32	0.9369
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	13.26	0.9413
AT1G34300			lectin protein kinase family p...		Potri.013G059900 [exp]	15.71	0.8554
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003101 [exp]	16.24	0.9220

Compare expression of checked genes

Potri.012G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.