Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 157 / 1e-40 AtRLP7 receptor like protein 7 (.1) AT1G45616 154 / 2e-39 AtRLP6 receptor like protein 6 (.1) AT3G11080 150 / 2e-38 AtRLP35 receptor like protein 35 (.1) AT3G11010 141 / 2e-35 AtRLP34 receptor like protein 34 (.1) AT3G28890 139 / 7e-35 AtRLP43 receptor like protein 43 (.1.2) AT4G13920 137 / 4e-34 AtRLP50 receptor like protein 50 (.1) AT2G15080 136 / 1e-33 AtRLP19 receptor like protein 19 (.1.2) AT5G27060 134 / 5e-33 AtRLP53 receptor like protein 53 (.1) AT1G71400 126 / 1e-30 AtRLP12 receptor like protein 12 (.1) AT3G05660 123 / 2e-29 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G028500 [exp] 631 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G025400 [exp] 618 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G028600 [exp] 608 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G031251 [exp] 592 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1) Potri.012G007932 [exp] 576 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1) Potri.012G010101 [exp] 515 / 1e-172 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.010G010100 [exp] 509 / 7e-172 AT1G47890 320 / 3e-94 receptor like protein 7 (.1) Potri.012G005600 [exp] 501 / 2e-167 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G009900 [exp] 486 / 2e-161 AT1G45616 358 / 2e-107 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 140 / 8e-35 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002215 [exp] 131 / 1e-32 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027580 [exp] 125 / 2e-30 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10003387 [exp] 125 / 5e-30 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10042239 [exp] 124 / 1e-29 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 120 / 2e-28 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10014910 [exp] 118 / 8e-28 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10016337 [exp] 118 / 1e-27 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10006825 [exp] 118 / 2e-27 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10016338 [exp] 117 / 3e-27 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G020895.1 pacid=42782665 polypeptide=Potri.012G020895.1.p locus=Potri.012G020895 ID=Potri.012G020895.1.v4.1 annot-version=v4.1 ATGCCTTTCTTTACTTCTCATCTTCCATTCCCAGTTAATTATACTTTGAATCCTGTAAGGCCAGCCAACATGGGGTTTTCACTACCGTGCCTCTCTCAAT CTCTCTCTTTCTTTCTGCTTCTCTTCCATTTCCACTCAACAATTTCATCTCCACTCTCCTCAAATTACTCTTCTTCTTCTTCTTCTCATTTGTGTGCTCA TCACCAATCTCTTTCTCTCCTTCAATTCAAACAATCATTTTCCATTAATAGTTCTGCTTCCTGGGAGGATTGCCAATATCCCAAGACAGAGTCATGGAAA GTGGATACAGACTGCTGCTTGTGGGATGGAGTCACTTGTGACCTGAAAACCGGGCATGTCACTGCACTGGACCTCTCTTGCAGCATGCTTTACGGCACCC TCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAACAGCTCGACCTCTCTTTCAATGATTTCAACTCCTCCCATATTTCTTCTCGATTTGGCCA GTTCTCCAATCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCGGAAATCTCTCACCTCTCCAAAATGGTTTCTCTTGATCTC TCTTGGAACGACTATGTGAGTGTAGAACCAATTTCTTTTGACAAGCTTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGATTTGA GTGGGGTAAACATGTCACTAGTTGTTCCTGATTCCTTGATGAATCTGTCTATTTCTCTGTCATCGCTCAAACTCAATTACTGTAGATTGCAAGGAAAACT CCCATCCTCAATGGGGAAATTTAAGCACCTACAGTACTTGCATCTTGGATGGAACAATCTTACTGGTCCAATTCCATATGATTTTGATGAGTTGGTTTCA TTTGATCTCTCTTGGAACAACTATTTGAATCTAGAACCAATTTCATTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGATTTGAGTGGGG TAAACATGTCACTAGTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCAGTGACTGTAGATTGCAAGGAAAACTCCCATC CTCAATGGGGAAATTTAAGCACCTGCAGTACTTGGATCTTGGATGGAACAATCTTACTGGTCCAATTCCATATGATTTTGAGCAACTCAGTGAGTTGGTT TCCCTTCATCTCTCTTTCAACCAATATCTAAGTCTAGAACCAATTTCTTTTGACAAGATTGTTCAAAACCTAACCAAGCTAAGAGATCTCGCTTTGGGTT CTGTAAATATGTCTTTGGTTGCACCTAATTCCTTGACGAACCTGTCCTCTTCTTTGTCATCTCTCTCCCTCAGTAATTGTGGATTGCAGGGGAAATTCCC GGGTAACATCTTTCTCCTCCCAAACCTTGAATCACTCTATTTGTCATACAACAAGGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTC TTGGGGTTGGGTCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACCACTTAATAAATAATCTAAAGTCATTAGAATATATGTTATTTTTAATAGTAA CATTATAA
AA sequence Show only first row Show all	>Potri.012G020895.1 pacid=42782665 polypeptide=Potri.012G020895.1.p locus=Potri.012G020895 ID=Potri.012G020895.1.v4.1 annot-version=v4.1 MPFFTSHLPFPVNYTLNPVRPANMGFSLPCLSQSLSFFLLLFHFHSTISSPLSSNYSSSSSSHLCAHHQSLSLLQFKQSFSINSSASWEDCQYPKTESWK VDTDCCLWDGVTCDLKTGHVTALDLSCSMLYGTLLPNNSLFSLHHLQQLDLSFNDFNSSHISSRFGQFSNLTHLNLSGSDLAGQVPSEISHLSKMVSLDL SWNDYVSVEPISFDKLSFDKLVRNLTKLRELDLSGVNMSLVVPDSLMNLSISLSSLKLNYCRLQGKLPSSMGKFKHLQYLHLGWNNLTGPIPYDFDELVS FDLSWNNYLNLEPISFDKLVRNLTKLRELDLSGVNMSLVVPDSLMNLSSSLSSLKLSDCRLQGKLPSSMGKFKHLQYLDLGWNNLTGPIPYDFEQLSELV SLHLSFNQYLSLEPISFDKIVQNLTKLRDLALGSVNMSLVAPNSLTNLSSSLSSLSLSNCGLQGKFPGNIFLLPNLESLYLSYNKGLTGSFPSSNLSNVL LGLGLSNTRISVYLENHLINNLKSLEYMLFLIVTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G020895 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	1.73	0.8904
					Potri.003G153266 [exp]	8.00	0.8501
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	11.31	0.8857
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	11.83	0.8518	UBC.11
					Potri.017G111050 [exp]	14.69	0.8625
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	16.52	0.8857
					Potri.003G153332 [exp]	18.16	0.8167
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.002G205500 [exp]	18.97	0.8394	MRP4.1
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	20.37	0.8752
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	22.71	0.8549

Compare expression of checked genes

Potri.012G020895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.