Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02880 160 / 1e-49 mucin-related (.1) AT5G62270 52 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004400 [exp] 198 / 2e-64 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.007G133900 [exp] 58 / 2e-10 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 40 / 0.0002 AT5G62270 241 / 7e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012838 [exp] 163 / 3e-50 AT2G02880 346 / 4e-119 mucin-related (.1) Lus10030486 [exp] 163 / 3e-50 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10034311 [exp] 69 / 2e-14 AT5G62270 447 / 3e-157 unknown protein Lus10021682 [exp] 66 / 3e-13 AT5G62270 425 / 7e-149 unknown protein Lus10035022 [exp] 63 / 2e-12 AT5G62270 425 / 6e-149 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G021000.2 pacid=42783905 polypeptide=Potri.012G021000.2.p locus=Potri.012G021000 ID=Potri.012G021000.2.v4.1 annot-version=v4.1 ATGACTTGGACAACACAGATCCCAAGCTCTTACGAATTTAAAAGCAAGCTTGATGGTTGGGAAACAACAACGAAGGCACAAGATGGAGATATATGGGAAA TGTCACAGAGGGAGGAAGATACTCTCTTCCAAGAATTTGATCATCGAATAGCATACAGCAAATTTCAGATAGCTAGTTTTATCGAGGATCGCATATTTAG CAGGAGAAGACCTATTGATGGTTGGAAATACATGATAGAGGTGTTGGGACCAGATGCCAAGAAAGGGAGGGGTAGTGTTTCAAGAATACCGAGTATATCA GATCCATCTACACAACCATTCAAGGGGGACAGGAAACTGATTTCCCACAAAGGGGGTAGTTCAGCTCCTGACTCTGCTGAACTTTCTTTCTTTGTTCTTG GCCATTGTATGTTTGCTTGGTGA
AA sequence Show only first row Show all	>Potri.012G021000.2 pacid=42783905 polypeptide=Potri.012G021000.2.p locus=Potri.012G021000 ID=Potri.012G021000.2.v4.1 annot-version=v4.1 MTWTTQIPSSYEFKSKLDGWETTTKAQDGDIWEMSQREEDTLFQEFDHRIAYSKFQIASFIEDRIFSRRRPIDGWKYMIEVLGPDAKKGRGSVSRIPSIS DPSTQPFKGDRKLISHKGGSSAPDSAELSFFVLGHCMFAW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02880			mucin-related (.1)		Potri.012G021000 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	6.24	0.7592
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.014G055300 [exp]	9.59	0.7350
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	9.79	0.6665
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	10.95	0.7186
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	15.77	0.7296
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	27.34	0.6803
					Potri.001G388001 [exp]	28.14	0.6655
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000166 [exp]	34.00	0.6266
AT5G05590		PAI2	phosphoribosylanthranilate iso...		Potri.014G188400 [exp]	38.05	0.5779
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G435300 [exp]	40.24	0.6868

Compare expression of checked genes

Potri.012G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.