Plant FIBer expression Database

Potri.012G021900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49400 824 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042218
[exp]
943 / 0 AT3G49400 769 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10008595
[exp]
928 / 0 AT3G49400 771 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
CL0186 PF12657 TFIIIC_delta Transcription factor IIIC subunit delta N-term
Representative CDS sequence
>Potri.012G021900.1 pacid=42783811 polypeptide=Potri.012G021900.1.p locus=Potri.012G021900 ID=Potri.012G021900.1.v4.1 annot-version=v4.1
ATGGCGTCGCGATTCCAGGCGGTGGCGTTAGTGGCGTCGCCGTCGTATCCAAACTCCATTGCTTGGTCCGACGATAACTTCATCGCCGTCGCTTCCGCTC
ACCTCGTCACCATTCTGAATCCAGCAGTGCCTTATGGACCAAGAGGTTTGATCAGAGTTCCGACATGTGAACCGTACCCAATTGGTTGTGTTAATAGGGA
GGATTTATTCACTAACTGCATGCTGCCCGCTGCATTATCTCGAGACCGTCGTCCATGTGTTCGGTCAATTTCATGGTCCCCAATTGGAATGGCTCCAAAT
TATGGGTGCTTGCTTGCTGTCTGCACTGTAGAAGGGCGTGTTAAGATTTACCGTCCACCTTTTTGTGATTTTAGTGCTGAGTGGGTAGAGGTTGTGGATA
TATCAGATAGGCTATATGATTATCTTGCCAAAATCAATTTTGGGGAGTTGGATAATACCCCCTCTGAATTCTCCCATGGGCAACCAATAATCCAAGGATG
TGCTGATGAGCGACCAAAATCCTGTGCTAATGACTTGCCAAACTCTGGCACATTAAAGCAATACAAGCGAAGGAAAGTGAATGTTCCCACTTACAACATT
AAGGACTCGGAAACTTTTCAGGACCAGTTATCAGATCCTATAAATAGGGGGAGAACCACTGCTGGATCTGACCATGAAAATAAAATAGACAGGAGGAGGA
CAACTAAGGTCCTTGGGAACTGCACACTCCCACTCATTACTGCAGAGAAATATGCTTCTCGCTGTGCCATGTTATCGTCTCTTGTTATTGCCTGGTCACC
AGTACTGTGGTTGCCATCAAAAATCTGTTCAGCTCCAGAAAATGATTCATCCAATGGATTCTCTATACTTGCAGTTGGAGGGAAGTCTGGTAAAATCTCT
GTCTGGAGAATTAATGTGCCACAATACTACTCTATTGAGCATAGTAGGGTCCCTACTACTGTAACATTTGTTGGACTTCTTCAAGCCCATAATTCATGGG
TCACAACAATCAGTTTGGCATTACTGGGTTCCAAGTCTAATCCTCAGGTCTTATTGGCTAGTGGGAGTTCTGATGGGAGTGTGAGGATCTGGATTGGGAA
GGGTGAGGAGTTGCTGGAGACATCAGGGGCCAATAATGCTCCCTTTTCTCTGCTGAAGGAGGTTGTATCTGTCAATTGTGTCCCAATTTCAGTACTATCA
CTGGCGGTACCTGTTCAAACCATGCACAAAATGCTTTTAGCAGTTGGCAAAGGATCTGGTTCATTTGAAGTATGGACAGCTGACATATCCAGCTCCAAAT
TTGATAAAGTTTGTTTATATGATGCTCATGACTGTGTTGTCACAGGTTTAGCTTGGGCTTTTGATGGATGTTGTTTGTACAGCTGTGGCCAGGAAAATTA
TGTCCGTGCTTGGGTTTTGCATGGAAGTGCTCTTTGTGAAGTATCGATTCCTTCAAATACTCCTGGTTTGAGGAGCTCAAATGATCTTCCAAATGTTTTT
GTTTCATGCCTTGGTGTGGCAGCATCCCCTGGAAATATTGCGCTTGCAATGGTTCGTAATGTAGATGGTGATTCGTTGGATCCCATGTATGAGGGAAGGC
TTCAGAAGGCTGTCGTTGAGTTCCTCTGGATAGGTGGACAACAGAAGGATATACTGTCTCCTTCTTCCTCTGATTTCACTAGCGAAGCCTTTCTTGGTTT
TTCTGCAAATGAATTGAATTATTGGGAATCTGATATTCTATGGTATTTAACGAAATATGAAAATCTGGATAACCCTCTAGTTGTTTGGGATATAGTGGCA
GCATTGTTGGCTTTCAAGCAGTCTGCACCAAAGTACATGGACCGTATACTGGTTAAGTGGCTTTCTGTGACATTTCTGGGTTCATACACAGGCCTTTCCA
TTGGCGACGTTCTGACATGCATCCCGGAGAATTTCTCAAAGATAACATCTCGACAATTGCACCTCCTTAATATCATCTGTAGACGTGTAATGCTATCTGA
TGTGAAGGCTGAAGAAATTAATTGTAAAGTGAACTTAGGAGGTTCAGCAGCTGCCAAAGCGGAGCATCTCACTTTGTGGATAGAGCTTCTTTTTAGCAGT
GAAAAAGAACTTCGTGAAAGGCTTGTGGGTTTCAGTTTGGCTACTTTTATAAATCGTTTGTCTGATTCAACCACAACGTTTTCCCGACCTGGATTTTGGT
ATCCTGTTGGAGTAGAACAAATGGAGCTGTGGATTGCACTTAATCATGATCGTGTTAGGGATCAACTAAAAGTCCTCGCATCAGAAGTCAGAAAGCGTGA
AAGAAGGCTTCAGTCAAGTGAATATGGAGTTGAAGAGCAATGCATCTATTGTTCAGAGTCAGTTACTTTTGATTCTCCAGAAGTTGCACATTGCCACTGC
TCTAACAGTACTGACGAAACTGTTCAGATCTACCAAATGGCAAGATGTGCTGTTTCCATGCAGGTTTGCCCAGCTATCCCTCTATGGTTTTGCAAGTGTT
GTTGTAGACGAGCTTCCAAATTGCCACCGGAGACTCTCTTTACATTGCCTGGTTATCCTTTAGATTTCAAATCCTTGACAGAATCTTCTGTTAAAGAAAT
CCCCACTAAACCCTTGTGTCCCTTTTGTGGGATACCTCTCCAAAGATTACAGCCAGATTTTCTACTCTCACCTTCACCAGTATAA
AA sequence
>Potri.012G021900.1 pacid=42783811 polypeptide=Potri.012G021900.1.p locus=Potri.012G021900 ID=Potri.012G021900.1.v4.1 annot-version=v4.1
MASRFQAVALVASPSYPNSIAWSDDNFIAVASAHLVTILNPAVPYGPRGLIRVPTCEPYPIGCVNREDLFTNCMLPAALSRDRRPCVRSISWSPIGMAPN
YGCLLAVCTVEGRVKIYRPPFCDFSAEWVEVVDISDRLYDYLAKINFGELDNTPSEFSHGQPIIQGCADERPKSCANDLPNSGTLKQYKRRKVNVPTYNI
KDSETFQDQLSDPINRGRTTAGSDHENKIDRRRTTKVLGNCTLPLITAEKYASRCAMLSSLVIAWSPVLWLPSKICSAPENDSSNGFSILAVGGKSGKIS
VWRINVPQYYSIEHSRVPTTVTFVGLLQAHNSWVTTISLALLGSKSNPQVLLASGSSDGSVRIWIGKGEELLETSGANNAPFSLLKEVVSVNCVPISVLS
LAVPVQTMHKMLLAVGKGSGSFEVWTADISSSKFDKVCLYDAHDCVVTGLAWAFDGCCLYSCGQENYVRAWVLHGSALCEVSIPSNTPGLRSSNDLPNVF
VSCLGVAASPGNIALAMVRNVDGDSLDPMYEGRLQKAVVEFLWIGGQQKDILSPSSSDFTSEAFLGFSANELNYWESDILWYLTKYENLDNPLVVWDIVA
ALLAFKQSAPKYMDRILVKWLSVTFLGSYTGLSIGDVLTCIPENFSKITSRQLHLLNIICRRVMLSDVKAEEINCKVNLGGSAAAKAEHLTLWIELLFSS
EKELRERLVGFSLATFINRLSDSTTTFSRPGFWYPVGVEQMELWIALNHDRVRDQLKVLASEVRKRERRLQSSEYGVEEQCIYCSESVTFDSPEVAHCHC
SNSTDETVQIYQMARCAVSMQVCPAIPLWFCKCCCRRASKLPPETLFTLPGYPLDFKSLTESSVKEIPTKPLCPFCGIPLQRLQPDFLLSPSPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49400 Transducin/WD40 repeat-like su... Potri.012G021900
[exp]
0 1
AT1G16970 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMO... Potri.011G107400
[exp]
11.22 0.7432 Pt-KU70.1
AT2G30480 unknown protein Potri.013G157800
[exp]
14.76 0.7645
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Potri.019G103900
[exp]
15.93 0.7602
AT2G35800 SAMTL S-adenosyl methionine transpor... Potri.010G217900
[exp]
20.14 0.7092
AT4G01810 Sec23/Sec24 protein transport ... Potri.014G112600
[exp]
40.65 0.7027
AT4G22970 RSW4, AESP RADIALLY SWOLLEN 4, homolog of... Potri.003G021700
[exp]
42.20 0.7167
AT2G35920 RNA helicase family protein (.... Potri.016G068900
[exp]
42.21 0.6428
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.006G160400
[exp]
45.51 0.6888
Potri.001G151601
[exp]
46.63 0.6976
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Potri.010G073600
[exp]
46.95 0.6455

Potri.012G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.