Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33060 229 / 6e-68 AtRLP27 receptor like protein 27 (.1) AT2G15042 223 / 6e-68 Leucine-rich repeat (LRR) family protein (.1) AT2G25440 220 / 1e-65 AtRLP20 receptor like protein 20 (.1) AT3G05660 223 / 2e-65 AtRLP33 receptor like protein 33 (.1) AT2G33020 222 / 3e-65 AtRLP24 receptor like protein 24 (.1) AT3G25010 222 / 5e-65 AtRLP41 receptor like protein 41 (.1) AT3G05650 216 / 4e-63 AtRLP32 receptor like protein 32 (.1) AT4G13810 211 / 4e-62 AtRLP47 receptor like protein 47 (.1.2) AT5G27060 214 / 5e-62 AtRLP53 receptor like protein 53 (.1) AT1G45616 212 / 3e-61 AtRLP6 receptor like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027600 [exp] 654 / 0 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G025400 [exp] 644 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G016715 [exp] 641 / 0 AT2G33060 247 / 1e-74 receptor like protein 27 (.1) Potri.012G008911 [exp] 641 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G027400 [exp] 637 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G028101 [exp] 636 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.011G055000 [exp] 629 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G010445 [exp] 622 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.011G054500 [exp] 609 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002214 [exp] 212 / 8e-64 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003389 [exp] 218 / 3e-63 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10032335 [exp] 209 / 2e-60 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026415 [exp] 206 / 4e-59 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10011064 [exp] 205 / 1e-58 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10024721 [exp] 204 / 1e-58 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10042239 [exp] 200 / 1e-56 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011039 [exp] 196 / 3e-55 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 189 / 2e-53 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 186 / 3e-52 AT2G33060 335 / 5e-103 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G021940.1 pacid=42783360 polypeptide=Potri.012G021940.1.p locus=Potri.012G021940 ID=Potri.012G021940.1.v4.1 annot-version=v4.1 ATGCCACAGTGTTTGGGGAACTTCAGCAGCATGCTCTCAGTATTGCATCTAGGCATGAACAATCTTCAAGGCACTATCCCTTCAACATTTTCAAAGGATA ATAGCTTGGAATATCTCAACCTCAATGGAAATGAAATAGAAGGGAAAATATCATCGTCTATCATCAACTGCACAATGTTGCAAGTTCTTGATCTTGGCAA CAATAAGATTGAGGATACATTTCCCTATTTTCTAGAAATACTTCCAAAGCTGCAAATTCTAATTCTAAAATCCAATAAACTCCAAGGTTTAGTGAAGGAT CTGAATGCATATAATTCCTTCTCAAAATTACGGATTTTTGATGTCTCTGACAATAATTTTAGTGGGTCGTTGCCAACAAGGTATTTCAATAGTCTTGGAA CAATGATGACCTCGGATCAAAACATGATTTACATGGGGGCAACAAATTACACTAGCTATGTCTATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGA GTTTACGAAGATCCGAAGTACTATCAGAGTACTTGATTTGTCAAATAACAATTTCACCGGAGAGATTCCAAAAGTGATAGGAAAGCTTAAAGCACTCCAA CAGCTCAACCTTTCTCATAATTCCCTTAACGGTCATATTCAATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTA CCGGAAGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCATATAACCAACTCGAGGGGCCCATACCAAGTGGAGAGCAATT CAACACCTTTGATGCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATCTCAAGTACTAAAAAAATGTTACGGTGATGAGGCACGATCATTACCGCCA TCAAGCTTTGATGAAGGAGATGATTCAACATTGTTTGGAGAAGGATTTGGATGGAAAGCTGTGACAGTGGGGTATGGATGCGGGTTTGTGTTTGGAGTTG CAACGGGATACGTTGTGTTTAGAACAAAAAAGCCTTCATGGTTTCTTAGGATGGTTGAAGATAAATGGAATCTCCAGAGCAAAAAAACAAAGAAGAATGC TGGCAGATATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G021940.1 pacid=42783360 polypeptide=Potri.012G021940.1.p locus=Potri.012G021940 ID=Potri.012G021940.1.v4.1 annot-version=v4.1 MPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKDNSLEYLNLNGNEIEGKISSSIINCTMLQVLDLGNNKIEDTFPYFLEILPKLQILILKSNKLQGLVKD LNAYNSFSKLRIFDVSDNNFSGSLPTRYFNSLGTMMTSDQNMIYMGATNYTSYVYSIEMTWKGVEIEFTKIRSTIRVLDLSNNNFTGEIPKVIGKLKALQ QLNLSHNSLNGHIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSYNQLEGPIPSGEQFNTFDASSFEGNLGLCGSQVLKKCYGDEARSLPP SSFDEGDDSTLFGEGFGWKAVTVGYGCGFVFGVATGYVVFRTKKPSWFLRMVEDKWNLQSKKTKKNAGRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G021940 [exp]	0	1
AT5G26960			Galactose oxidase/kelch repeat...		Potri.009G066500 [exp]	28.86	0.5621
AT5G25930			Protein kinase family protein ...		Potri.018G088100 [exp]	61.02	0.5771
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	62.73	0.5732
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	96.99	0.5675
AT3G58480			calmodulin-binding family prot...		Potri.016G063000 [exp]	113.47	0.5573
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.007G007800 [exp]	184.46	0.5186	Pt-ACS1.1,ACS3
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	215.66	0.5015
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.012G070300 [exp]	263.96	0.5022

Compare expression of checked genes

Potri.012G021940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.