Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 428 / 3e-150 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 413 / 4e-144 CID10 CTC-interacting domain 10 (.1.2) AT4G10610 406 / 8e-142 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G14450 370 / 7e-128 CID9 CTC-interacting domain 9 (.1) AT1G53650 360 / 4e-124 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 315 / 4e-106 CID13 CTC-interacting domain 13 (.1) AT2G16940 56 / 2e-08 Splicing factor, CC1-like (.1.2.3) AT1G22760 56 / 3e-08 PAB3 poly(A) binding protein 3 (.1) AT4G34110 55 / 5e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G55340 54 / 8e-08 PHIP1 phragmoplastin interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005400 [exp] 672 / 0 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 382 / 1e-131 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G377500 [exp] 366 / 2e-126 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 365 / 8e-126 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.001G448800 [exp] 338 / 7e-115 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.004G177000 [exp] 66 / 1e-11 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.010G209701 [exp] 65 / 2e-11 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.001G304000 [exp] 63 / 1e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G137200 [exp] 62 / 4e-10 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 490 / 3e-174 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 476 / 2e-168 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 423 / 3e-148 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 398 / 2e-138 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 400 / 5e-138 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 64 / 6e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 64 / 7e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 64 / 8e-11 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10010042 [exp] 63 / 2e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 62 / 4e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.012G022000.1 pacid=42784122 polypeptide=Potri.012G022000.1.p locus=Potri.012G022000 ID=Potri.012G022000.1.v4.1 annot-version=v4.1 ATGGCTGTTGCCGAGAATGCTGGGGTTAGGAATGGAACTACTGGTCAAAACTTTGACAACACTGTAGTGTCATCAGAGACGAAAGATCTTGAGAGATCAT CATCAAAACCCAGAAATGAACCAGTGGTGGCTAACAACACTAAAGACTCAAACTTTCAAGGCCAAAACAATGATCATCAGAGTATTAATGGCATGTCTGG TGAGACCGGGGGTTTAAGCAATGGAAAGACTAATGGGCCACAGATGCAAAATGGGTTTGATATGAACCAGTCTGGTGGCTATGGGGATGATCAGATTCAT CATCAAAGGGCTAAATCTAACGGGGTTAATGATATGAATGATTTGGTGGAGATGCTGTCAAAGCTGAATCCTATGGCTGAAGAGTTTGTGCCTCCTTCAC TAGCTAATCATCCTGGATTTTTTGGTAACGGCTTTGGCTTTAATGCTAACAATTTTCTAGTGCAAATTAATAATGGGATTGCCAATGGACAGACTAATAG AAGGAAGAAGAACAGCTATAATCAAGGGAGGCGAAGGATGAACAACAGGACAAGTATGGCTCAGCGAGATGAGATAATCAAGAGGACTGTATATGTTTCA GACATTGATCAACAGGTTACTGAAGAGCAACTTGCAGGTCTCTTTATTCATTGCGGACAGGTTGTTGACTGTCGTATATGTGGTGACCCTAACTCTGTTC TACGTTTTGCCTTCGTCGAGTTTACTGATGAAGAAGGTGCAAGGACTGCATTAAGTTTGTCAGGGACTGTTCTTGGATTTTACCCGCTAAGAGTGCTGCC ATCAAAAACTGCAATCGCACCGGTTAACCCAACATTTTTGCCAAGGTCTGAAGATGAGCGCGAGATGTGTGCAAGGACTGTTTATTGTACAAATATTGAC AAAAAGATTACCCAGGCAGATGTCAGGCTCTTCTTTGAATCCTTTTGCGGAGAGGTTCATCGCTTGAGGCTCCTGGGAGATTATCATCATTCAACCCGCA TAGCTTTTGTTGAGTTCGCAGTGGCAGAGAGTGCAATTGCAGCTCTTAACTGCAGTGGTGCGGTTCTGGGATCCTTGCCAATAAGGGTGAGCCCTTCAAA GACACCTGTTCGGCCTCGCCTCCCCCGTCCACCTTTCAACTGA
AA sequence Show only first row Show all	>Potri.012G022000.1 pacid=42784122 polypeptide=Potri.012G022000.1.p locus=Potri.012G022000 ID=Potri.012G022000.1.v4.1 annot-version=v4.1 MAVAENAGVRNGTTGQNFDNTVVSSETKDLERSSSKPRNEPVVANNTKDSNFQGQNNDHQSINGMSGETGGLSNGKTNGPQMQNGFDMNQSGGYGDDQIH HQRAKSNGVNDMNDLVEMLSKLNPMAEEFVPPSLANHPGFFGNGFGFNANNFLVQINNGIANGQTNRRKKNSYNQGRRRMNNRTSMAQRDEIIKRTVYVS DIDQQVTEEQLAGLFIHCGQVVDCRICGDPNSVLRFAFVEFTDEEGARTALSLSGTVLGFYPLRVLPSKTAIAPVNPTFLPRSEDEREMCARTVYCTNID KKITQADVRLFFESFCGEVHRLRLLGDYHHSTRIAFVEFAVAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRLPRPPFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.012G022000 [exp]	0	1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	5.00	0.8529	Pt-CYP94.7
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	10.29	0.8476
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	11.53	0.8214
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	11.74	0.8344
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	12.80	0.8286
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	16.24	0.8175
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	16.70	0.8161
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	17.60	0.8263
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.002G064300 [exp]	19.33	0.7728	SAUR61
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.008G101400 [exp]	19.33	0.8024	MYB108.2

Compare expression of checked genes

Potri.012G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.