Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03890 62 / 3e-12 unknown protein AT3G10120 56 / 5e-10 unknown protein AT5G53710 47 / 3e-07 unknown protein AT3G61920 48 / 4e-07 unknown protein AT1G64700 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005700 [exp] 242 / 4e-83 AT5G03890 49 / 2e-07 unknown protein Potri.006G213100 [exp] 70 / 2e-15 AT3G10120 122 / 9e-36 unknown protein Potri.016G079700 [exp] 68 / 1e-14 AT3G10120 114 / 1e-32 unknown protein Potri.001G448600 [exp] 66 / 9e-14 ND / Potri.006G018200 [exp] 51 / 2e-08 ND / Potri.011G153000 [exp] 42 / 8e-05 AT1G64700 160 / 1e-49 unknown protein Potri.006G076500 [exp] 40 / 0.0002 AT2G30230 42 / 7e-05 unknown protein Potri.001G448500 [exp] 40 / 0.0003 AT1G64700 154 / 3e-47 unknown protein Potri.001G089000 [exp] 39 / 0.0008 AT3G61920 81 / 5e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021358 [exp] 47 / 9e-07 AT3G10120 122 / 2e-35 unknown protein Lus10017035 [exp] 47 / 2e-06 AT3G10120 119 / 7e-34 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.012G022300.1 pacid=42783646 polypeptide=Potri.012G022300.1.p locus=Potri.012G022300 ID=Potri.012G022300.1.v4.1 annot-version=v4.1 ATGTCCATCTTTTCTTGGAGAAAAATGGGCAATTGTTTAGCTCATTGTGTTAGACCTCCCTTTATAGGTTCATGCATTAGAATTGCTGAAGCCAAGCAAG AGAAAGTTTTGCAGGTCGTGAAAACAGATGGAAAGGTTTTGGAATTCAGCACTCCAATTCTTGTGAGAGATATCTTGGTGAACTTTTCTGGCTCAGGAAT TGGTCTAACACAGGAAGGTATAGAGGAGCATCATCTGCCACCAGGTTACGAGTTAAAGCTCGGGAATGTTTACTATATTCTTCCTTCAGCTCCAGTGATT TCACCTGTGATTGACAGAGAAGATCAAGCCAGTGGAGGTGTCCAGAGGATTAAAGTAGTTATCACAAAGCAACAACTTCGACACCTTTTGACAAAGGAAA TATCTGTTGAGGAGGTTCTGTTGGGGCTAGAGCAGAAAAGTTCTTCTCTTGATTCTCCAAGAAACTGGAAGTCAAATCTGGAACCAATTCCTGAAGGGTC TGAGTAG
AA sequence Show only first row Show all	>Potri.012G022300.1 pacid=42783646 polypeptide=Potri.012G022300.1.p locus=Potri.012G022300 ID=Potri.012G022300.1.v4.1 annot-version=v4.1 MSIFSWRKMGNCLAHCVRPPFIGSCIRIAEAKQEKVLQVVKTDGKVLEFSTPILVRDILVNFSGSGIGLTQEGIEEHHLPPGYELKLGNVYYILPSAPVI SPVIDREDQASGGVQRIKVVITKQQLRHLLTKEISVEEVLLGLEQKSSSLDSPRNWKSNLEPIPEGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03890			unknown protein		Potri.012G022300 [exp]	0	1
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	9.79	0.8691
AT2G41760			unknown protein		Potri.006G051500 [exp]	10.39	0.8778
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	16.43	0.8684	Pt-IAA11.1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	17.43	0.8554
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	17.86	0.8475
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	21.49	0.8586
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	22.95	0.8252
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.010G069100 [exp]	25.69	0.8067
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.005G223000 [exp]	26.15	0.8177
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	28.30	0.8524

Compare expression of checked genes

Potri.012G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.