Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSP21.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27670 221 / 6e-73 HSP21 heat shock protein 21 (.1) AT5G51440 73 / 1e-15 HSP20-like chaperones superfamily protein (.1) AT1G52560 73 / 2e-15 HSP20-like chaperones superfamily protein (.1.2) AT4G25200 69 / 3e-14 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT4G10250 44 / 2e-05 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT2G29500 43 / 3e-05 HSP20-like chaperones superfamily protein (.1) AT1G59860 42 / 9e-05 HSP20-like chaperones superfamily protein (.1) AT1G07400 41 / 0.0002 HSP20-like chaperones superfamily protein (.1) AT1G53540 40 / 0.0005 HSP20-like chaperones superfamily protein (.1) AT5G59720 39 / 0.0009 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053400 [exp] 95 / 2e-23 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.003G076000 [exp] 82 / 8e-19 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G109200 [exp] 70 / 3e-14 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.001G238700 [exp] 52 / 2e-08 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.001G192600 [exp] 53 / 3e-08 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.009G148000 [exp] 49 / 4e-07 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 47 / 2e-06 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.008G062300 [exp] 45 / 1e-05 AT5G59720 198 / 9e-66 heat shock protein 18.2 (.1) Potri.009G039200 [exp] 44 / 1e-05 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006444 [exp] 110 / 2e-29 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10011385 [exp] 101 / 3e-26 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10031154 [exp] 67 / 4e-13 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10023653 [exp] 63 / 2e-11 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10022322 [exp] 60 / 7e-11 AT4G27670 85 / 3e-20 heat shock protein 21 (.1) Lus10031730 [exp] 59 / 7e-10 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10028937 [exp] 56 / 7e-09 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10014876 [exp] 52 / 2e-08 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10024225 [exp] 51 / 2e-07 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10040723 [exp] 47 / 1e-06 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.012G022400.1 pacid=42783838 polypeptide=Potri.012G022400.1.p locus=Potri.012G022400 ID=Potri.012G022400.1.v4.1 annot-version=v4.1 ATGGCTTCGTCAACATTGTCTTGGTCATCTGCACCTTTGTTGTCAAGCAAAGGCGAAGTTGTGCCTTCAACTAAGCCTATAACTCCTTGCTCAGTGTCTT TTCCATCAAGGGGTGGTTTTGGCAAGAGTACTACTAAGCCTTCAAGGTTGGCTTTGGTGAGAGCAGAAGCTGCCGGTGATCACAAGGATACTTCAGTGGA CGTGCATGTCAATCAGCAAGGAAACAACCAAGGGACAGCAGTTGAGAGAAAGCCTCGAAAATTAGCTGTTGATATCTCCCCATTCGGTTTGTTGGATCCA TTGTCACCAATGAGGACAATGCGTCAAATGCTGGACACAATGGACCGACTGTTCGATGATGCACTGACAATTCCTAGCAGCAGGAACAGGACAGGAGGAG AGGTGCGTGCACCATGGGAAATCAAAGATGAGGAACATGAGATCAAGATGAGGTTCGACATGCCAGGACTGTCTAAGGAGGATGTCAAGGTCTCGGTCGA GGATGATGTGCTTGTTATTAAAGGAGAGCACAAGAAGGAAGAAACTGGCGATGATTCATGGTCTAGTAGCAGCGTCAGCTCTTATGATACCCGGCTTAGG CTACCGGATAATTGCGGAAAGGATAAGATCAAGGCTGAGTTGAAAAATGGAGTTCTGTTCATTAACATTCCTAAGACCAAAGTTGAACCTAAGGTCATTG ATGTCCAAATCCAGTGA
AA sequence Show only first row Show all	>Potri.012G022400.1 pacid=42783838 polypeptide=Potri.012G022400.1.p locus=Potri.012G022400 ID=Potri.012G022400.1.v4.1 annot-version=v4.1 MASSTLSWSSAPLLSSKGEVVPSTKPITPCSVSFPSRGGFGKSTTKPSRLALVRAEAAGDHKDTSVDVHVNQQGNNQGTAVERKPRKLAVDISPFGLLDP LSPMRTMRQMLDTMDRLFDDALTIPSSRNRTGGEVRAPWEIKDEEHEIKMRFDMPGLSKEDVKVSVEDDVLVIKGEHKKEETGDDSWSSSSVSSYDTRLR LPDNCGKDKIKAELKNGVLFINIPKTKVEPKVIDVQIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.012G022400 [exp]	0	1	Pt-HSP21.3
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	1.41	0.9492
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.002G149700 [exp]	6.00	0.9264
AT5G35320			unknown protein		Potri.018G132600 [exp]	8.83	0.9310
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	10.48	0.9350
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	12.24	0.9097
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	14.14	0.9298
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	14.96	0.9225
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	19.87	0.9270
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	21.81	0.9244
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	22.31	0.7962

Compare expression of checked genes

Potri.012G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.