Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53660 136 / 1e-35 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G37740 136 / 3e-34 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 129 / 7e-32 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G24150 122 / 9e-30 GRF ATGRF8 growth-regulating factor 8 (.1) AT3G13960 119 / 4e-29 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 106 / 5e-26 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G36400 105 / 2e-24 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 103 / 5e-24 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G45480 85 / 2e-17 GRF ATGRF9 growth-regulating factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G006200 [exp] 701 / 0 AT5G53660 132 / 4e-34 growth-regulating factor 7 (.1) Potri.001G082700 [exp] 171 / 8e-47 AT4G24150 156 / 1e-41 growth-regulating factor 8 (.1) Potri.002G115100 [exp] 147 / 5e-38 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 140 / 2e-35 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.001G169100 [exp] 132 / 5e-34 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.014G012800 [exp] 130 / 4e-32 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.013G077500 [exp] 125 / 1e-31 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.007G007100 [exp] 127 / 6e-31 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.019G042300 [exp] 121 / 2e-30 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015651 [exp] 138 / 2e-37 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 135 / 2e-36 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10009533 [exp] 130 / 2e-32 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10020352 [exp] 125 / 1e-31 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10008268 [exp] 122 / 6e-30 AT4G24150 156 / 3e-42 growth-regulating factor 8 (.1) Lus10033236 [exp] 120 / 2e-29 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10004455 [exp] 119 / 4e-29 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10011559 [exp] 119 / 2e-28 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 118 / 4e-28 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10014380 [exp] 109 / 7e-27 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G022600.2 pacid=42784101 polypeptide=Potri.012G022600.2.p locus=Potri.012G022600 ID=Potri.012G022600.2.v4.1 annot-version=v4.1 ATGATGACAACAGATGATGGCTTAAACGTTTCAAACAAGGTAGCTAAGGAAATAAACACTACTAGTAGTATTAGTAATGTTGATTTTGGTGTGAAGCTAC ATCAACCTATTGATCATCATCAATCATTTCCTTCTAGTACTCCTATGATGGTTCCTCATGTTAATCACCACCGTCCAATGTTTGACAATGGTCCCACATC ATCATGTGATAGAAACAAGTCTTTGATGAACTATATAAGTGATCGTATATACCGTGTTGCTGCTGGTGGTGCTACCAGTGGCGGTGCAGTTGGGGTTAGG AATTTGCAGCCTTTTGACATTTCTGAAACAAGTATCTCTACAGCAGCTTCTGCCTTCAGATCCCCAGGAGGCAACATGGCAGCGTCTTTGGGGTTTCCTT TTACAAATACACAGTGGAAAGAGCTTGAAAGACAAGCCATGATATACAACTATATAACGGCCTCAGTCCCTGTGCCTCCTCAATTTCTAATTCCAACCCC AATGGGGAATGGATTGAATGTAAGGTTCTCAAATGGGGCAGATCTAGAACCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGAGGTGCTCAAGAGAT GTGGCACCTGATCAGAAATACTGTGAGCGTCATATGCATAGAGGCAGACCCCGTTCAAGAAAGCATGTGGAACTCAATGCTAGCAACAATAACAACAAGA AGAACCGCCATAATCCTGCTATTTGTCCAGAAGCTCCTGTTACCGTGGCCATTTCTAAACCCACAATCAACAACAGCAACAGTGGCTCTGCCTCTCACGA TCAGTTTTTTGGGCCTATGCCTCAGCCATATATCCAGACCCCAGTTTTTGTAAACAAAACCAGCGAGAAGACTTCAACTTATGATGTTAATGGAGCCTAT GGTTCCACATTCAAAGAACCCAGGAGCTTGGACTGGATGTTGAAAGGGGAAGCTGGTCCTATAGCCAAAAATGATCAACAATGGCCACATCTAGTGCACA AAGAAATTGAACTAGCTACTGAAGGTTCCTTTAACAGTGCTTCTGTTCTCAAACAGCATTACCAAGGAGAGTCTTTGAATTTGAACTCATTTGGAAATTT TAATGCTAGAGAAGACCAACAAAGCAATCAATATAGTCTGTTTCTTGATGAGGCTCCAAGGAGTTTTATTGATGCATGGTCTAATGATGCAATTTCTCGA AACACAAGTTCTGTTTCCTCAGATGGGAAGCTCCATCTTTCCCCTCTCAGTCTATCAATGGGAAGCAATAGGTCTACTGATGATGAAATGGGTCAGATCC AAATGGGTTTAGGCCTAATCAAATCAGATCGAAATGAAGAATGTGGTAACACTAGCAGCGCCCCAGGTGGCCCCTTGGCAGAGGTGTTACAACTGAGGAC AAGCAACACCACAGGAACCAATCAATCTTCTTCTATGATGGAAAATGGTGATTCTATTAGTCCTCCAGCTACTACAGTCTCTTCTCCATCTGGGGTTTTG CAGAAAACACTTGCCTCATTTTCTGATAGCAGTGGTAATAGCAGTCCAACTCTTGCCAGTTCAAGGACCAAACCTGAAATTGCCATGCTTTGGTTAAATC AAGGCTAA
AA sequence Show only first row Show all	>Potri.012G022600.2 pacid=42784101 polypeptide=Potri.012G022600.2.p locus=Potri.012G022600 ID=Potri.012G022600.2.v4.1 annot-version=v4.1 MMTTDDGLNVSNKVAKEINTTSSISNVDFGVKLHQPIDHHQSFPSSTPMMVPHVNHHRPMFDNGPTSSCDRNKSLMNYISDRIYRVAAGGATSGGAVGVR NLQPFDISETSISTAASAFRSPGGNMAASLGFPFTNTQWKELERQAMIYNYITASVPVPPQFLIPTPMGNGLNVRFSNGADLEPGRCRRTDGKKWRCSRD VAPDQKYCERHMHRGRPRSRKHVELNASNNNNKKNRHNPAICPEAPVTVAISKPTINNSNSGSASHDQFFGPMPQPYIQTPVFVNKTSEKTSTYDVNGAY GSTFKEPRSLDWMLKGEAGPIAKNDQQWPHLVHKEIELATEGSFNSASVLKQHYQGESLNLNSFGNFNAREDQQSNQYSLFLDEAPRSFIDAWSNDAISR NTSSVSSDGKLHLSPLSLSMGSNRSTDDEMGQIQMGLGLIKSDRNEECGNTSSAPGGPLAEVLQLRTSNTTGTNQSSSMMENGDSISPPATTVSSPSGVL QKTLASFSDSSGNSSPTLASSRTKPEIAMLWLNQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53660	GRF	ATGRF7	growth-regulating factor 7 (.1...		Potri.012G022600 [exp]	0	1
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.010G124301 [exp]	15.09	0.7918
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.002G019000 [exp]	15.62	0.8024
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	29.56	0.7750
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	31.60	0.7937
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G124000 [exp]	43.30	0.7713
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.016G142500 [exp]	48.06	0.7634
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029400 [exp]	71.81	0.7687
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	86.97	0.7415
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.006G254900 [exp]	103.40	0.7220
AT1G51405			myosin-related (.1)		Potri.009G052400 [exp]	105.57	0.7460

Compare expression of checked genes

Potri.012G022600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.