Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51660 2117 / 0 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1) AT4G05420 88 / 3e-17 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 87 / 8e-17 DDB1B damaged DNA binding protein 1B (.1) AT3G55200 78 / 4e-14 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 78 / 4e-14 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357900 [exp] 91 / 3e-18 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.010G212100 [exp] 75 / 4e-13 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.008G048900 [exp] 73 / 1e-12 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031692 [exp] 2273 / 0 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031111 [exp] 2251 / 0 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10020922 [exp] 85 / 4e-16 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10033455 [exp] 85 / 4e-16 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10023443 [exp] 69 / 4e-11 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 68 / 6e-11 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03178 [poplar] [flax] CPSF_A CPSF A subunit region CL0186 [poplar] [flax] PF10433 [poplar] [flax] MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term
Representative CDS sequence Show only first row Show all	>Potri.012G022700.2 pacid=42782616 polypeptide=Potri.012G022700.2.p locus=Potri.012G022700 ID=Potri.012G022700.2.v4.1 annot-version=v4.1 ATGAGCTACGCTGCCTACAAGATGATGCACTGGCCAACCACCATAGACACGTGCGTCTCCGGTTTCGTAACCCATTCTCGCTCCGAGTCAGCCCATCTTC CTCAACTCCACACTGACGATCTTGACTCTGACTGGCCTTCACGCCGCCGCCACGGTGGAGGAATTGGCCCTACTCCGAACCTAATTGTTGCTTCCGGTAA TGTTCTTGAACTCTATGTTGTCAGGGTTCAAGAAGAGGGGGCGAGGAGTTCGGGTGAATTGAAGCGTGGTGGAGTTATGGATGGTGTTGCTGGAGCTTCT CTTGAGCTTGTTTGCCATTACAGGTTGCATGGTAATGTTGAGTCAATGGGGGTGTTGTCTGTTGAAGGTGGTGATGATTCTAGGAGAAGGGATTCTATTA TATTGGCATTTAAAGATGCAAAGATTTCTGTTTTGGAGTTTGATGATTCAATTCATGGACTTCGCACAAGCTCTATGCATTGTTTTGAAGGTCCAGACTG GCGTCATTTGAAAAGAGGTAGAGAATCATTTGCAAGAGGTCCATTGGTAAAGGTTGATCCTCAAGGAAGATGCGGAGGTGTTCTTGTTTATGATTTGCAG ATGATAATACTTAAGGCTGCTCAGGCTGGTTCTGCCTTGGTTCAAGATGAAGATGCTTTTGGTTCTGGAGCTGCTATCTCTGCTCATATTGCCTCTTCTT ACATCATTAATCTTAGAGATTTAGACATGAAACATGTAAAAGATTTCATATTTGTGCATGATTATATTGAACCTGTGGTGGTTGTCCTTCACGAGCGAGA GCTTACTTGGGCTGGGCGTGTTGTGTGGAAGCATCATACTTGCATGATTTCTGCTCTTAGTATCAGTACAACTTTGAAGCAACCTACCCTTATATGGTCT ATTGGAAATCTCCCGCATGATGCGTATAAGCTGCTTGCAGTGCCATCTCCCATTGGCGGTGTTCTTGTGATTGGTGTGAACACTATCCATTATCACAGTG AGTCAGCTTCTTGTGCATTGGCTCTGAACAGCTATGCTGCTTCTGTTGATAGCAGTCAAGAGCTGCCAAGAGCAACTTTCAGTGTGGAACTTGATGCTGC CAATGCAACTTGGCTATTAAAAGATGTAGCCTTGCTGTCAACAAAAACTGGGGAACTCTTGTTACTGACCCTTGTTTATGATGGAAGGGTTGTGCAGAGA CTTGATCTTTCCAAGTCTAAAGCTTCAGTACTTACTTCGGATATTACAACACTTGGAAACTCGTTCTTTTTTCTGGGAAGTCGTTTGGGAGACAGTTTGC TTGTGCAGTTTACTTCTGGATTGGGATCTTCAATGTTGTCACCTGGTTTAAAGGAAGAGGTTGGAGATATTGAAGGTGATTTGCCTTCAGCAAAGCGATT GAAGGTGTCCTCTTCTGATGCTTTACAAGATATGGTTAGCGGGGAGGAACTTTCCTTGTATAGTTCAGCGCCAAATAATGCAGAATCATCACAGAAAACT TTCTCATTTACAGTGAGGGATTCGTTGATCAATGTTGGCCCTTTGAAGGACTTTGCATATGGTTTAAGGATTAATGCGGATGCAAATGCAACTGGAATCT CCAAACAAAGCAACTATGAATTGGTGTGCTGTTCTGGACACGGTAAAAATGGTGCTCTCTGTGTCCTTCAGCAATCAATTCGCCCAGAAATGATTACAGA GGTTGAACTTCCTGGATGTAAAGGAATTTGGACTGTTTACCACAAGAATGCACGTAGTCATAGTGTTGACTCATTGAAAATGGCTTCAGATGATGAATAT CATGCATATTTGATCATAAGCATGGAGGCACGGACAATGGTGCTTGAAACTGCTGATCATTTGACGGAAGTCACTGAAAGTGTGGACTATTTTGTGCAAG GAAGAACAATTGCTGCAGGGAACTTGTTTGGAAGACGTCGAGTTGTTCAGGTGTTTGAACGTGGTGCTCGAATCTTAGATGGTTCTTTTATGACTCAAGA TTTAAGCTTTGGAGGTTCTAACTCGGAAACAGGTCGTTCTGAGAGTTCCACAGTGATGCATGTGTCTATTGTGGATCCATATGTTTTAGTTAGAATGGCT GACGGGAGTATTCAGATTCTTGTTGGAGATCCTTCTGCTTGTACAGTTTCTGTAAACACTCCGTCTGCCTTTCAGAGCTCAACGAAATCAGTATCTGCCT GCACACTGTATCATGATAAAGGGCCAGAGCCATGGCTCCGGAAGACAAGTACAGATGCATGGCTTTCTACTGGAATTAGCGAGGCTATTGATGGTGCTGA CAGTGGAGCTCATGAGCAGGGTGATATATACTGTGTTGTTTGTTATGAGACTGGTGCCCTTGAAATATTTGATGTGCCAAATTTCAATTCTGTGTTCTTC GTGGATAAATTTGTCTCTGGAAAAACTCATCTCCTTGATACCTGCACGGGGGAACCTGCTAAAGATATGATGAAGGGGGTGAAAGAAGAAGTTGCCGGTG CTGGCAGAAAAGAAAGTACTCAAAACATGAAGGTTGTTGAATTGACCATGCTGAGATGGTCTGGACGTCACAGTCGCCCTTTTCTTTTTGGAATATTGAC TGATGGGACAATTCTTTGTTACCACGCATACCTGTTTGAAGGTCCAGATGGTACTTCTAAACTAGAAGATTCTGTTTCTGCTCAAAATTCTGTTGGTGCT AGCACCATCAGTGCTTCAAGGCTTAGAAATCTGCGATTCGTTCGGGTCCCTTTGGACACATACACTAGGGAGGAAACATCAAGTGAAACCTCATGCCAAA GGATTACGACTTTCAAGAATATTAGTGGTTATCAAGGGTTTTTCCTTTCTGGATCAAGACCAGCTTGGTTTATGGTATTTAGAGAGCGACTGCGAGTTCA TCCACAGCTATGTGATGGATCTATTGTTGCCTTCACTGTTCTTCACACTGTTAATTGTAATCATGGGCTCATTTATGTCACGTCACAGGGCAATTTGAAG ATTTGTCACCTGTCATCTGTCTCGAGTTATGACAACTACTGGCCAGTGCAAAAGATTCCTTTGAAAGGAACTCCACATCAAGTGACTTATTTTGCAGAGA GGAATTTATACCCTCTCATAGTTTCAGTTCCTGTTCAAAAGCCAGTAAATCAAGTTCTTTCATCACTGGTTGATCAAGAAGTTGGCCATCAGATTGAGAA TCATAATTTGAGTTCTGAAGAAATACACCGAACTTACAGTGTAGATGAATTTGAGGTTCGGATTTTGGAACCATCTAATGGCCCTTGGCAAGTTAAGGCT ACAATCCCAATGCAGACTTCTGAAAATGCATTGACTGTACGAATGGTTTCACTGTTTAATACAAGTACAAAGGAAAATGAAACACTTTTGGCTGTTGGGA CTGCTTATGTGCAAGGGGAGGATGTTGCTGCTAGAGGACGTATTCTGCTGTTTTCTGTAGTCAAAAATCCAGAAAATTCTCAGATTTTGGTTTCAGAAGT TTATTCTAAGGAATTGAAAGGTGCTATATCTGCTTTAGCCTCACTTCAAGGCCATCTGTTGATAGCTTCTGGTCCAAAAATTATTTTACACAAATGGACC GGTACAGAGTTGACTGGTGTTGCATTTTCTGATGCTCCACCATTATATGTCGTGAGCTTAAATATTGTGAAGAATTTTATTCTCTTGGGTGACATTCACA AAAGCATATACTTTCTTAGTTGGAAGGAGCAGGGGGCTCAGCTCAGCTTGCTGGCGAAGGATTTTGCCTCCCTTGATTGTTTCTCAACAGAGTTTTTGAT TGATGGAAGTACTTTGAGCCTTGTGGTTTCAGATGAACAAAAGAATGTTCAGATATTCTATTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAA CTGCTTTCAAGGGCTGAATTTCATGTTGGTGCCCTTGTTACTAAGTTCATGAGGTTGCAAATGCTTTCCCCTTCACTTGATCGAAGTGGTGCCGCTCCAG TTTCTGACAAGACCAATCGCTTTGCTTTACTGTTTGGTACTTTGGACGGCAGCATAGGTTGTATTGCACCTCTTGACGAGCTCACATTTCGTAGGCTGCA GTCACTGCAGAAGAAACTTGTTGATGCTGTTCCCCATGTAGCTGGTTTAAACCCAAAATCATTCCGCCAGTTCCGCTCTGATGGAAAGGCTCACCGACCT GGCCCTGAAAGCATAGTTGATTGTGAAATGCTTTCCTATTATGAGATGATCCCGTTGGAGGAACAGGTTGAAATTGCCCAACAGATTGGAACAACACGTG CTCAGATTTTGTCAAATTTAAACGACCTTACTCTGGGCACAAGTTTTCTGTGA
AA sequence Show only first row Show all	>Potri.012G022700.2 pacid=42782616 polypeptide=Potri.012G022700.2.p locus=Potri.012G022700 ID=Potri.012G022700.2.v4.1 annot-version=v4.1 MSYAAYKMMHWPTTIDTCVSGFVTHSRSESAHLPQLHTDDLDSDWPSRRRHGGGIGPTPNLIVASGNVLELYVVRVQEEGARSSGELKRGGVMDGVAGAS LELVCHYRLHGNVESMGVLSVEGGDDSRRRDSIILAFKDAKISVLEFDDSIHGLRTSSMHCFEGPDWRHLKRGRESFARGPLVKVDPQGRCGGVLVYDLQ MIILKAAQAGSALVQDEDAFGSGAAISAHIASSYIINLRDLDMKHVKDFIFVHDYIEPVVVVLHERELTWAGRVVWKHHTCMISALSISTTLKQPTLIWS IGNLPHDAYKLLAVPSPIGGVLVIGVNTIHYHSESASCALALNSYAASVDSSQELPRATFSVELDAANATWLLKDVALLSTKTGELLLLTLVYDGRVVQR LDLSKSKASVLTSDITTLGNSFFFLGSRLGDSLLVQFTSGLGSSMLSPGLKEEVGDIEGDLPSAKRLKVSSSDALQDMVSGEELSLYSSAPNNAESSQKT FSFTVRDSLINVGPLKDFAYGLRINADANATGISKQSNYELVCCSGHGKNGALCVLQQSIRPEMITEVELPGCKGIWTVYHKNARSHSVDSLKMASDDEY HAYLIISMEARTMVLETADHLTEVTESVDYFVQGRTIAAGNLFGRRRVVQVFERGARILDGSFMTQDLSFGGSNSETGRSESSTVMHVSIVDPYVLVRMA DGSIQILVGDPSACTVSVNTPSAFQSSTKSVSACTLYHDKGPEPWLRKTSTDAWLSTGISEAIDGADSGAHEQGDIYCVVCYETGALEIFDVPNFNSVFF VDKFVSGKTHLLDTCTGEPAKDMMKGVKEEVAGAGRKESTQNMKVVELTMLRWSGRHSRPFLFGILTDGTILCYHAYLFEGPDGTSKLEDSVSAQNSVGA STISASRLRNLRFVRVPLDTYTREETSSETSCQRITTFKNISGYQGFFLSGSRPAWFMVFRERLRVHPQLCDGSIVAFTVLHTVNCNHGLIYVTSQGNLK ICHLSSVSSYDNYWPVQKIPLKGTPHQVTYFAERNLYPLIVSVPVQKPVNQVLSSLVDQEVGHQIENHNLSSEEIHRTYSVDEFEVRILEPSNGPWQVKA TIPMQTSENALTVRMVSLFNTSTKENETLLAVGTAYVQGEDVAARGRILLFSVVKNPENSQILVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWT GTELTGVAFSDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLSLLAKDFASLDCFSTEFLIDGSTLSLVVSDEQKNVQIFYYAPKMSESWKGQK LLSRAEFHVGALVTKFMRLQMLSPSLDRSGAAPVSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPKSFRQFRSDGKAHRP GPESIVDCEMLSYYEMIPLEEQVEIAQQIGTTRAQILSNLNDLTLGTSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Potri.012G022700 [exp]	0	1
AT5G50340			ATP-dependent peptidases;nucle...		Potri.001G191200 [exp]	1.41	0.7932
AT5G53620			unknown protein		Potri.015G006700 [exp]	2.82	0.8298
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	4.00	0.7570
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	5.19	0.7882
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	10.72	0.7820
AT3G10690		GYRA	DNA GYRASE A (.1)		Potri.010G247000 [exp]	12.80	0.7870
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	15.19	0.7359
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.002G032100 [exp]	16.24	0.7276	Pt-MPK1.2
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	20.07	0.7383	PFT1.1
					Potri.003G044301 [exp]	20.39	0.7721

Compare expression of checked genes

Potri.012G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.