Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73080 582 / 0 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G20140 566 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 560 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 556 / 2e-179 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 555 / 5e-179 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 554 / 6e-179 AtPEPR2 PEP1 receptor 2 (.1) AT3G24240 506 / 3e-160 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 483 / 2e-150 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 467 / 2e-145 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G35710 459 / 1e-142 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009300 [exp] 623 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.011G139700 [exp] 592 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 558 / 0 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.019G025500 [exp] 549 / 8e-177 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 545 / 3e-175 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 544 / 6e-175 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 532 / 2e-170 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 534 / 2e-169 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 525 / 2e-166 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008849 [exp] 1100 / 0 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10039030 [exp] 605 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10038392 [exp] 556 / 2e-178 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 553 / 1e-176 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011756 [exp] 481 / 1e-150 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000509 [exp] 472 / 6e-148 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 466 / 1e-145 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 451 / 9e-141 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 449 / 2e-139 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023677 [exp] 448 / 8e-139 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G022800.1 pacid=42782982 polypeptide=Potri.012G022800.1.p locus=Potri.012G022800 ID=Potri.012G022800.1.v4.1 annot-version=v4.1 ATGTTTCTGCTTTGCCAATGTTTTGTTCTAATCTCTCTTACCCTTTTCCAAGCTTCTTCACCAGCCTCATTACCTTCATCAGCAATCGACCTTCTCAAGT TCCAAGATAGTCTTCCGTTACTTTCTCAAAAGCTCTTGCCATGGAACCAATCAAGCTCATCTTCCTCTCCTTGCCAATGGCCTGGAGTTTCTTGCTATCC CAACAAAAGTTTTCAAGTCAAGGCCTTAAACCTGTCAGGATATGGTCTTTCTGGTGTCTTGAACAACTCCATTTCTTATCTCTGCCGCCATAAACATTTG GTCTTACTTGATCTTAGTGGAAACCATTTCACCGGTGTTATTCCTCACTTGCTTGTAAACTGTGGTCAACTAAATACCATTCTTCTCAATGACAATGGCT TGGAAGGTTCAATTCCTGCTGATGTTTTCAAATCAAAGAAGCTTGTACAGTTAGACTTCGGCTACAACTCTCTTTCTGGTAATATTCCTCCTGAGGTAAG CTTTTGCACCAACCTTGAATACCTAGGGTTGTATAACAATTATTTGAGTGGAGCGGTTCCAAGTGAAATATTTTCTCTGCCAAAGTTGAATTTTATGTAT CTTAACACAAATAACCTAACAGGGTTGTTGCCAAATTTCTTACCTTCCTGCGCAATCTCTGATCTTTTGATTCATGAGAATGCATTTTCTGGATCTCTTC CTTCTACTCTCAGTAATTGCCAAAACCTTACCGTGTTTATCGCCTCTCAAAACAATTTTGAAGGAGTCATTGCACCAGAGATTTTCAAGGGTCTTTTGCA ACTTGAAGTTCTTTATCTTGATGGAAACAAACTTGAAGGGGAAATTCCAGAAACTTTATGGGGTCTTGAAAATTTACAAGAGCTTGTTCTTTCAGGGAAC AAGCTGAATGGCACAATATCTGAGAGGATTTCTCAATGCCCTCAGCTTATGACCATTGCTCTTTCTGGTAATAATCTTGTTGGTCATATTCCTAGATTAG TTGGAACTCTCCAATATTTGACCAATCTAATTCTCTTTGACAATAAGCTTGATGGCTCATTGCCTGCTGAGCTTGGAAATTGCAGTTCACTTGTTGAATT TAGGCTTCAGAATAACCTTATAGGAGGGAACATCCCTCCTGAAATATGTAATCTTGAGAATCTTGAGGTTCTTTTCTTGTCCAATAATTTTGTTGAAGGC CATATTCCAAGGCAGATAGGGAGATTGAGCAACCTTAAAATATTAGCTCTGTATAGCAATAATTTGAGTGGTATAATCCCATCTGAAATCACCAATTTTA CAAAACTCACCTATCTTTCATTTGCTCATAATGATCTTACTGGTGAGGTACCATTTGATCTTGGGAAAAATTCTCCAGATCTTGATAGACTCGACCTAAC CTCGAACCACCTTTACGGACCAATTCCTCCTAATGTATGCAATGGCAATAATCTGAGAGTTCTGACCCTTGGGGACAACAGGTTTAATGGGATCTTTCCG GTTGAGATTGGCAAGTGTTTGTCTCTAAGGAGGGTGATTCTTAGTAACAATCTTCTAGAGGGGAGTATACCAACCGATTTGGAGAGGAACTCTGGGATTT CTTACTTGGAAGTTAGAGGAAACTTGATTGAAGGAAAAATACCTGCAGTGTTTGGTTCTTGGAGCAATCTATCGATGATTGATTTTTCAGGGAACAAATT CTCTGGCTCTATACCTCCTGAGCTTGGAAAGCTTGCAAATCTTCAAGCCTTGAGACTTTCTTCTAATAATTTAACGGGAAGCATTCCCTCTGACCTCAGT CATTGCAGAAAGTTCATTAAAATAGACTTGAGTAAGAATCAGTTGTCAGGAAAAATTCCTTCAGAGATTACTTCATTGGAAAAATTAGAAAGCCTTCTCC TTCAAGAGAACAAACTTAGTGGAGCTATTCCTGACTCCTTCTCTCCTCTTCAAGGTCTCTTTGAATTGCAGCTTAGCAGTAACATGCTTGAAGGTCCTAT TCCTTGCAGTTTGAGTAAGATCAACCATTTTAGTTCAGTTCTTAATCTGAGCTATAATAAGCTTTCTGGTAAAATCCCTGGGTGCCTTGGCAATCTAGAC AAGTTACAGATTCTTGATCTCTCATGCAACAGCTTCTATGGTGAGATGCCGACAGAACTCAACAACATGATCTCCCTTTACTTTGTCAACATATCATTCA ATCAACTCTCTGGCAAGCTTCCAACTTCATGGATTAGAATAATGGCTTCATATCCAGGGTCTTTTCTTGGAAATCCTGAACTTTGTTTGCCAGGTAATGA TGCAAGAGACTGCAAGAATGTTAGAGAAGGCCATACAAGAAGGCTTGACCGGCATGCGTTGGCTGGTGTCATTATATGTGTTGTTATCTCTATGGCATTG CTTTGTTCTGTGGTTTACATAATAGTGGTTCGAGTCCTTCAACATAAATATCACCGTGATCAATCACTTCTTCGTGAATGTCGATCGCATACTGAAGATT TGCCAGAAGATTTACAGTTTGAAGATATAATGCGTGCTACAGAAGGCAGGAGTGAGGAATATGTAATTGGGAGAGGCAAGCATGGCACAGTTTACAGGAC AGAATCCGCAAACTCCAGAAAGCATTGGGCTGTCAAGAAGGTGAGCTTGTCTGGGGATAACTTTAGCCTTGAAATGAGAACTTTGAGCGTAGTCAGGCAT CGAAATATCGTGAGAATGGGGGGTTACTGCATTAAAGATGGTTACGGGTTCATTGTAACTGAATTCATGCCTGGAGGAACATTATTTGATGTCCTACACA GACATGAACCACGCATGGCTTTGGATTGGGACACCCGATATCGCATTGCTCTTGGTGTTGCACAAGGCCTTTCTTACCTTCATCATGATTGCGTGCCACA AATCATTCACAGAGATGTCAAATCAGATAACATTTTGATGGATTCTGAATTGGAACCCAAGGTTGGAGATTTTGGGATGTCAAAAATGCTTCTTGATTCT GATTCAAGCTCGACGAGGTCTAGAATTGTAGGAACTCTAGGTTACATGGCACCAGAAAATGCATACTCAATCCGATTGACAGAGAAAGTCGATGTATACA GCTACGGAGTCATTTTGTTAGAGATTGTTTGCAGAAAGTTTCCAGTAGACCCCAGCTTTGAAGAAGGTCTGGATATCGTTTCCTGGACGAGGAAGAAGCT GCAAGAGAATGATGAATGTGTTTGCTTCCTTGATAGAGAAATCAGTTTCTGGGATAGAGATGAGCAACAAAAGGCTTTGAAACTGCTAGAATTGGCACTT GAGTGCACTGAATCAGTGGCTGATAAGAGACCATCCATGAGAGATGTAGTAGGTTCTCTTATAAAATTGCATGATAAGCATGAAAGAAGAGTAAATAACA GAAACAATTCGAACCAAAACATCTTATATCCTTCCTGA
AA sequence Show only first row Show all	>Potri.012G022800.1 pacid=42782982 polypeptide=Potri.012G022800.1.p locus=Potri.012G022800 ID=Potri.012G022800.1.v4.1 annot-version=v4.1 MFLLCQCFVLISLTLFQASSPASLPSSAIDLLKFQDSLPLLSQKLLPWNQSSSSSSPCQWPGVSCYPNKSFQVKALNLSGYGLSGVLNNSISYLCRHKHL VLLDLSGNHFTGVIPHLLVNCGQLNTILLNDNGLEGSIPADVFKSKKLVQLDFGYNSLSGNIPPEVSFCTNLEYLGLYNNYLSGAVPSEIFSLPKLNFMY LNTNNLTGLLPNFLPSCAISDLLIHENAFSGSLPSTLSNCQNLTVFIASQNNFEGVIAPEIFKGLLQLEVLYLDGNKLEGEIPETLWGLENLQELVLSGN KLNGTISERISQCPQLMTIALSGNNLVGHIPRLVGTLQYLTNLILFDNKLDGSLPAELGNCSSLVEFRLQNNLIGGNIPPEICNLENLEVLFLSNNFVEG HIPRQIGRLSNLKILALYSNNLSGIIPSEITNFTKLTYLSFAHNDLTGEVPFDLGKNSPDLDRLDLTSNHLYGPIPPNVCNGNNLRVLTLGDNRFNGIFP VEIGKCLSLRRVILSNNLLEGSIPTDLERNSGISYLEVRGNLIEGKIPAVFGSWSNLSMIDFSGNKFSGSIPPELGKLANLQALRLSSNNLTGSIPSDLS HCRKFIKIDLSKNQLSGKIPSEITSLEKLESLLLQENKLSGAIPDSFSPLQGLFELQLSSNMLEGPIPCSLSKINHFSSVLNLSYNKLSGKIPGCLGNLD KLQILDLSCNSFYGEMPTELNNMISLYFVNISFNQLSGKLPTSWIRIMASYPGSFLGNPELCLPGNDARDCKNVREGHTRRLDRHALAGVIICVVISMAL LCSVVYIIVVRVLQHKYHRDQSLLRECRSHTEDLPEDLQFEDIMRATEGRSEEYVIGRGKHGTVYRTESANSRKHWAVKKVSLSGDNFSLEMRTLSVVRH RNIVRMGGYCIKDGYGFIVTEFMPGGTLFDVLHRHEPRMALDWDTRYRIALGVAQGLSYLHHDCVPQIIHRDVKSDNILMDSELEPKVGDFGMSKMLLDS DSSSTRSRIVGTLGYMAPENAYSIRLTEKVDVYSYGVILLEIVCRKFPVDPSFEEGLDIVSWTRKKLQENDECVCFLDREISFWDRDEQQKALKLLELAL ECTESVADKRPSMRDVVGSLIKLHDKHERRVNNRNNSNQNILYPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.012G022800 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	5.29	0.6874	Pt-TKI1.2
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	13.41	0.6392	Pt-ARRO.2,2OGox14
AT3G26680		SNM1, ATSNM1	SENSITIVE TO NITROGEN MUSTARD ...		Potri.014G139600 [exp]	14.76	0.7377
					Potri.001G203300 [exp]	16.12	0.7419
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	36.49	0.6684
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	38.00	0.6171	Pt-GPA1.2
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	39.08	0.6731
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	41.56	0.5827
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	46.66	0.6353	GLT1.2
					Potri.001G203900 [exp]	51.96	0.6708

Compare expression of checked genes

Potri.012G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.