Plant FIBer expression Database

Potri.012G022900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53650 82 / 2e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G006500
[exp]
102 / 7e-31 AT5G53650 78 / 7e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032946
[exp]
81 / 4e-22 AT5G53650 110 / 6e-34 unknown protein
Lus10008848
[exp]
80 / 9e-22 AT5G53650 109 / 2e-33 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G022900.1 pacid=42783836 polypeptide=Potri.012G022900.1.p locus=Potri.012G022900 ID=Potri.012G022900.1.v4.1 annot-version=v4.1
ATGGGTTACGTATTGAGAGTGAGATTGGCTTCATTCTTTGCAGGAGCAGCAACAGCATCATTTGCAGGACTCTATCTCCTTTACCAAGATTTCAAGGTTG
CCCATGATGCCATCTCTCAACAGGTGGAAAGTGCTCATGAATCACTTGATAGACGGATCTCTGCATTGGAAAAATTGAAACAAAGTGAAGCTCCACAGCC
TCTGCAAGCAACAGAATAG
AA sequence
>Potri.012G022900.1 pacid=42783836 polypeptide=Potri.012G022900.1.p locus=Potri.012G022900 ID=Potri.012G022900.1.v4.1 annot-version=v4.1
MGYVLRVRLASFFAGAATASFAGLYLLYQDFKVAHDAISQQVESAHESLDRRISALEKLKQSEAPQPLQATE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53650 unknown protein Potri.012G022900
[exp]
0 1
AT1G72020 unknown protein Potri.013G110600
[exp]
1.00 0.9060
AT1G12390 Cornichon family protein (.1) Potri.001G116100
[exp]
3.46 0.8691
AT3G59540 Ribosomal L38e protein family ... Potri.008G076100
[exp]
4.24 0.8868
AT2G47690 NADH-ubiquinone oxidoreductase... Potri.014G129600
[exp]
5.00 0.8693
AT1G05720 selenoprotein family protein (... Potri.013G126900
[exp]
5.29 0.8582
AT4G09550 ATGIP1 ARABIDOPSIS ATGCP3 INTERACTING... Potri.016G034200
[exp]
7.14 0.8033
AT1G51650 ATP synthase epsilon chain, mi... Potri.008G008900
[exp]
7.74 0.8823
AT1G73177 APC13, BNS anaphase-promoting complex 13,... Potri.004G058400
[exp]
7.93 0.8441
AT5G49510 PFD3, PDF3 prefoldin 3 (.1.2) Potri.010G147600
[exp]
8.24 0.8698
AT5G53045 unknown protein Potri.012G017000
[exp]
13.78 0.8072

Potri.012G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.