Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00850 90 / 5e-23 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 87 / 4e-22 GIF2 GRF1-interacting factor 2 (.1.2) AT5G28640 73 / 2e-16 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103900 [exp] 97 / 1e-25 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 84 / 2e-20 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.019G013100 [exp] 76 / 2e-17 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.013G043700 [exp] 74 / 1e-16 AT5G28640 134 / 4e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027132 [exp] 89 / 1e-23 AT4G00850 148 / 7e-46 GRF1-interacting factor 3 (.1) Lus10032892 [exp] 91 / 2e-23 AT4G00850 185 / 3e-59 GRF1-interacting factor 3 (.1) Lus10005524 [exp] 65 / 2e-13 AT5G28640 152 / 2e-46 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10006568 [exp] 65 / 3e-13 AT5G28640 145 / 4e-43 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10008847 [exp] 54 / 2e-10 AT1G01160 66 / 2e-15 GRF1-interacting factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [poplar] [flax] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Potri.012G023100.1 pacid=42782843 polypeptide=Potri.012G023100.1.p locus=Potri.012G023100 ID=Potri.012G023100.1.v4.1 annot-version=v4.1 ATGCAGCAGTCACCGCAACAAATGTTGAGCATCACCACTGAGCAGATTCAAAAGTACTTAGAAGAGAACAAGCAGCTGATTATGGCTATACTGGAGAATC AGAACAAGGGAAACGTTTCTGAATGTGCTTCGTATCAAGCCCAGTTACAGCAGAACCTGATGTACCTAGCAAGAATTGCTGATGCCCAACCACAAGGAAC CACAATGCCTTCTCAGATGCCCCCTCAGCAGCCCGCAGTGAAGCAAGAGCAGTACATGCAGCCATCTCAAGTTGCTATGACTCAGCAACCAATTTTCTTC AATCAGAAGCTCCCTTTCCAAACGAACTTTCAGCATGAGCAGCAGCAACAGCTGCCACCACACCTCCAACAGCAACACTTCACCCAAGGACAGATGAGAA TGAGACCCGGTGTCACTGATCAAGATTCTGATGCCTAA
AA sequence Show only first row Show all	>Potri.012G023100.1 pacid=42782843 polypeptide=Potri.012G023100.1.p locus=Potri.012G023100 ID=Potri.012G023100.1.v4.1 annot-version=v4.1 MQQSPQQMLSITTEQIQKYLEENKQLIMAILENQNKGNVSECASYQAQLQQNLMYLARIADAQPQGTTMPSQMPPQQPAVKQEQYMQPSQVAMTQQPIFF NQKLPFQTNFQHEQQQQLPPHLQQQHFTQGQMRMRPGVTDQDSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.012G023100 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.006G178500 [exp]	8.66	0.8089
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	13.41	0.7783
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	41.42	0.8020
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.018G081300 [exp]	43.54	0.7922
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.006G251100 [exp]	44.45	0.7911
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	45.66	0.7897
AT1G71820		SEC6	SEC6 (.1.2)		Potri.001G432820 [exp]	55.51	0.7640
AT5G20100			unknown protein		Potri.018G029600 [exp]	78.83	0.7520
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	90.11	0.7668
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	103.51	0.7322

Compare expression of checked genes

Potri.012G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.