Plant FIBer expression Database

Potri.012G023200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53620 583 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G006700
[exp]
1329 / 0 AT5G53620 528 / 6e-178 unknown protein
Potri.016G069900
[exp]
155 / 2e-44 AT5G53620 114 / 5e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032948
[exp]
1045 / 0 AT5G53620 599 / 0.0 unknown protein
Lus10008846
[exp]
1028 / 0 AT5G53620 594 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G023200.1 pacid=42782601 polypeptide=Potri.012G023200.1.p locus=Potri.012G023200 ID=Potri.012G023200.1.v4.1 annot-version=v4.1
ATGGAGGTGACTGCCGGAGTAGCGGCAGCCTCACGAGGTTCGTTGTCGAGGAAGGAGTGGCGAGCGGTTACGGAGCAGCAGCATAGAAATGGTGGTGGTG
GGGAAGAGGTGAATTTGGAACGTTCAAAGTTGGGGCAATCAGATGAGAGAACAATATATGAGGTGCAGCATGGAAGAGAGCCTGTTGATGTGGACTTCTG
TTCGATCACAGTTGATGGGGGTTTAGATGATGACATCTTGCAGCAGCGAATTCACAGCATTGCTAGACAAAGAGAAGAGTTGCAACACATGGAGACTGAG
CTCAGAGCTCAAGTGATTGCGGGGTCTGAGATCATGGAAATACAGAAAAGCTTCCATGCACAAATCAAAGAACGTGAAGATGCTGCTGCAAAGCTTCAGG
AACAACTGCATGAAAGGGGACAGACCATACATGACTTGGAAAGGAGAATGGAAGAAAAAGATAGAGAACTGCATGCAATTAAATTAGATAATGAAGCGGC
CTGGGCTAAAGAGGATCTTCTCAGGGAACAAAATAAAGAACTGGCAACATTTAGAAGAGAGCATGATCATTCTGAAGCTGAAAGGGCACAGCATATACAG
CAATTGCACGACCTTCAAGAACATTTTCAAGACAAGGAAAGGCAGATTCTAGAGTTGCAGGAACAGCATAGGGTTGATCAGGAGACTGTATATTTGAAGG
ATGAACAATTGAAAGTTTGGATCGCACGTGTTCAGGAGATGGATGCCTTGCATTCTAATGCCAACCATTCCTTACAAGCTGAATTGAGAGACCGCACAGA
GCAGTATAATCAGCTTTGGCTTGGCTGTCAACGACAGTTTGCAGAGATGGAGAGAGTTCATCTACATACTGTACAACAGCTTCAGTTTGAACTAGCTGAT
GCCAGAGAAAGGAGTGGATCCTATGCAGACGAGTCACACCTATCTCAATCAAACACAAAGGATGAATCAAACTTTATTCAGAACAATGGTAACCAACTTG
ATGTAAATGGAACTGCTGCATCCATTGCTAGTAATGGAGAACTGTCAAATGGGAATGCGGACAATGCTCAGTCTTTTGCGTCAACTGGAAATGCACATCA
GACCAACCATGTTGCTGGTGTTCCAATGGCTCCAACATCCTTACTCGGGATGCCTACCTACCTTCCACCTGGGCAGGTGACTGCACTGCACCCATTCATT
CTGCATCAACAGGGGATTCCCCATTCTATGGCATCTCATGTTCCCCAATCTCATGCTGGACATTTTCACTCAGTACCTGCAATGTCATCTGTCCCGCACT
GGCAGAATGGGCAGGCTGTAACAGAGAGTGCACAATTACCTGCACAGAATCAACTTGCATCATCTGAAGTTGATCATAACCTCATGAGTTCAGATGGGAA
GTATGACTATGAAAGGTCTGTTAATGGCCACGAGTTTCATCCAGACTATCTAGATGTTCACATCAGTCAAGGAGCAGAGCCAGATTCTGTAATCTCATCA
TCCACAGGGGAATCACAGGTTATTGAGTCGATTGACAGGGGTTACTTGGTCAATCCCCAACCTGAGCAGAGCTTGCAAGAGATTTCTTCCCAATTTAATG
ATGCCTTGAGATTGAATCCTCCTGAACGGAATACTGAAACGAAGGATCAAAATGTTTTGAACTTTAATAACCATGGCCAAGCTTTGATGGAAGAGCAGGC
AAGTTCTGCTGCCAGTGCATCACTATCTGAAACATCCACGCATTCAGTTAATGTCAACGAAACCACAATCAACAATGGAACTGCTGCTGTTTCGACTAAA
GCATTGATCTCATCTGAGCAGACAAATATGGTTACCGGAGGAAAAACTTCTGAGACTCCTCTCCTCGATGAAAGATCTCTGTTGACTTGCATAGTTCGCA
CCATTCCAGCTGGTGGCCAAATTCGGATCAATTCAACACTACCAAATAGACTTGGCAAGATGCTTTCACCTTTGCATTGGCATGATTACAAGAAAAAATA
TGGAAAGCTAGAGGACTTTGTGGGTGGTCACCCAGAATTGTTTTTGATCGAGGGTGACTTTATCCAGCTTCGGGAAGGAGCTCAAGAAATGATAGCTGCT
ACAGCAGCTGTTGCTAAAGTTGCTGCTGCTGTTGCAGCATCATCTCCTTACTCATCATTCTTGCCATCTGTGGCTGTTACTCCCATGGCACAATCTCATC
GACTTAAGAAGGTTCCGTCAATTGAATCAAAGTTTTCTAATGGTGTTAATTTTGGGGTTGCTGGAGGCATATCAAATGTAAAATTTTTGAGCAAATCAAA
AGATTCTCAAGAACTAAATGTGCCAGATTCTGATAGATCCAGCGTAAGCAGTACTCAAAGCAAGGGCTCAATTCATGGGACATCTAACTCAATTTATACT
GGAAAACAGCAGAGCAGGACAACTGGAGCTGCATTAACTTCTAGAAGATAG
AA sequence
>Potri.012G023200.1 pacid=42782601 polypeptide=Potri.012G023200.1.p locus=Potri.012G023200 ID=Potri.012G023200.1.v4.1 annot-version=v4.1
MEVTAGVAAASRGSLSRKEWRAVTEQQHRNGGGGEEVNLERSKLGQSDERTIYEVQHGREPVDVDFCSITVDGGLDDDILQQRIHSIARQREELQHMETE
LRAQVIAGSEIMEIQKSFHAQIKEREDAAAKLQEQLHERGQTIHDLERRMEEKDRELHAIKLDNEAAWAKEDLLREQNKELATFRREHDHSEAERAQHIQ
QLHDLQEHFQDKERQILELQEQHRVDQETVYLKDEQLKVWIARVQEMDALHSNANHSLQAELRDRTEQYNQLWLGCQRQFAEMERVHLHTVQQLQFELAD
ARERSGSYADESHLSQSNTKDESNFIQNNGNQLDVNGTAASIASNGELSNGNADNAQSFASTGNAHQTNHVAGVPMAPTSLLGMPTYLPPGQVTALHPFI
LHQQGIPHSMASHVPQSHAGHFHSVPAMSSVPHWQNGQAVTESAQLPAQNQLASSEVDHNLMSSDGKYDYERSVNGHEFHPDYLDVHISQGAEPDSVISS
STGESQVIESIDRGYLVNPQPEQSLQEISSQFNDALRLNPPERNTETKDQNVLNFNNHGQALMEEQASSAASASLSETSTHSVNVNETTINNGTAAVSTK
ALISSEQTNMVTGGKTSETPLLDERSLLTCIVRTIPAGGQIRINSTLPNRLGKMLSPLHWHDYKKKYGKLEDFVGGHPELFLIEGDFIQLREGAQEMIAA
TAAVAKVAAAVAASSPYSSFLPSVAVTPMAQSHRLKKVPSIESKFSNGVNFGVAGGISNVKFLSKSKDSQELNVPDSDRSSVSSTQSKGSIHGTSNSIYT
GKQQSRTTGAALTSRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53620 unknown protein Potri.012G023200
[exp]
0 1
AT4G34430 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3... Potri.009G114900
[exp]
3.16 0.8283 CHB901,SWI3.4
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.004G069200
[exp]
4.24 0.7779
AT2G37025 TRFL8 TRF-like 8 (.1.2) Potri.006G126300
[exp]
4.89 0.7486
AT1G19010 unknown protein Potri.001G350000
[exp]
6.92 0.8024
AT2G05710 ACO3 aconitase 3 (.1) Potri.002G229200
[exp]
10.48 0.7721
AT2G36650 unknown protein Potri.005G098400
[exp]
12.48 0.7469
AT5G53620 unknown protein Potri.015G006700
[exp]
14.96 0.7790
AT4G13780 methionine--tRNA ligase, putat... Potri.001G317500
[exp]
18.65 0.7853
AT1G27595 unknown protein Potri.002G107400
[exp]
19.89 0.7884
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.009G136000
[exp]
25.39 0.7850

Potri.012G023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.