Plant FIBer expression Database

Potri.012G023250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G023250.1 pacid=42783377 polypeptide=Potri.012G023250.1.p locus=Potri.012G023250 ID=Potri.012G023250.1.v4.1 annot-version=v4.1
ATGCCCAAAAAGACCCTTCACTCTCTATTCCAAAAAAAAAAAAAACAAATAGACCCTTTTCTCTGTCCAATCCAACCAAAACATAGTAGTTCCTCCTCGG
CTACAACAACTCTTCTCAAGACCACCAAGATCGTCTACCTCACGGTTCCTGTCCAGCAGAGTTTCATCATTCCATTCACAGCGGCAACAAAGTTTCTTCC
TCTCGATCACAGCAGCAGCAGTGTTGTTTTTTTTTCCTTTTTTTTTCCTCTCTTCAGCAGACCAGCGACTCAACCGGTCAACCCAACTACACTACTGCAG
CAAGCACCACAGCAACCAAGCAGTGTCCACTTCTTCTTAATTCTTTTCCATTCGCAGCATCCACAGCAGTAG
AA sequence
>Potri.012G023250.1 pacid=42783377 polypeptide=Potri.012G023250.1.p locus=Potri.012G023250 ID=Potri.012G023250.1.v4.1 annot-version=v4.1
MPKKTLHSLFQKKKKQIDPFLCPIQPKHSSSSSATTTLLKTTKIVYLTVPVQQSFIIPFTAATKFLPLDHSSSSVVFFSFFFPLFSRPATQPVNPTTLLQ
QAPQQPSSVHFFLILFHSQHPQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G023250
[exp]
0 1
AT1G02930 ATGST1, GST1, E... EARLY RESPONSIVE TO DEHYDRATIO... Potri.002G207093
[exp]
8.88 0.8120
AT4G01575 serine protease inhibitor, Kaz... Potri.014G108800
[exp]
41.91 0.7919
AT2G16760 Calcium-dependent phosphotries... Potri.014G120300
[exp]
42.03 0.7722
AT5G08240 unknown protein Potri.005G092400
[exp]
55.09 0.7862
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.016G020900
[exp]
63.87 0.7635
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.016G020500
[exp]
67.04 0.7593
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.001G369100
[exp]
78.16 0.7502 ATCSLE1.1
AT3G02720 Class I glutamine amidotransfe... Potri.017G143940
[exp]
85.29 0.7380
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G014000
[exp]
86.25 0.7534
AT1G22340 ATUGT85A7 UDP-glucosyl transferase 85A7 ... Potri.016G020800
[exp]
91.88 0.7438

Potri.012G023250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.