Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRK4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24430 803 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 768 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 734 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT3G50530 697 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 675 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 670 / 0 Protein kinase superfamily protein (.1) AT1G49580 665 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 664 / 0 Protein kinase superfamily protein (.1) AT2G17890 445 / 2e-150 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 423 / 2e-142 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176700 [exp] 818 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 797 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.007G040800 [exp] 700 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 698 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.005G135900 [exp] 696 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 681 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 669 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 644 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.007G057600 [exp] 432 / 1e-145 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008875 [exp] 852 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 800 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10002966 [exp] 712 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 656 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 514 / 4e-178 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10041914 [exp] 436 / 7e-147 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 433 / 1e-146 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 345 / 5e-112 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10038460 [exp] 345 / 7e-112 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 343 / 3e-111 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G023300.1 pacid=42783265 polypeptide=Potri.012G023300.1.p locus=Potri.012G023300 ID=Potri.012G023300.1.v4.1 annot-version=v4.1 ATGGGACACTGCTGCAGCAAAGACGTGTCTGCTGTTAACAATGAAGTGATCAACTCGATCAAGCATCCAGCTACTCCGCCGAACGCGGCGACAGTTGAGG TGGCACCGCCTGCCACCAATGGCTACGCCAATTCATTCGCAGCCAGCCCATTTCAGAGCCCACTTCCCGCGGGAGTCATGCCATCGCCTTCCCCGGCGAG GACGCCGGGGAGGAAGTTCCGGTGGCCGTTGCCGCCTCCTTCTCCGGCTAAGCCGATCATGGCTATGATGAGGAGGCGGGTGCAGGGGAAGCAGCAGCCT CAGGAGGGGCAACCGATAACGGTGGATGGTGGCGGAGAGGGAGGAGGGGGAGAGAGGGTAGCGGCGGGGACTGGGACGGGGGGTTTGGATAAGAATTTTG GGTATCCAAAGAACTTGGCGGCGAAGTTTGAGTTGGGAAAGGAGGTGGGGAGAGGGCATTTTGGGCATACTTGCTGGGCTAAAGGAAAGAAAGGAGAGCT TAAAGGACAACCTGTTGCTGTCAAGATCATTTCCAAAGCTAAGATGACAACAGCAATATCAATTGAAGATGTTCGACGGGAGGTCAAGATATTGAAAGCA TTGTCGGGGCATAAGAATATAATCAAATTCTATGATGCTTTTGAGGATGAAAATAATGTCTACATAGCCATGGAATTATGTGAAGGTGGAGAACTGCTGG ACAGAATTTTATCAAGAGGGGGAAGGTACACCGAGCAAGATGCTAAAACTATTGTTGTGCAAATTCTAAGTGTAGTTGCCTATTGTCATCTTCAAGGGGT TTCTCACCGTGATCTAAAGCCAGAGAATTTTCTTTTCACCTCAAGAGATGAGGATGCTCCAATGAGGATTATCGATTTTGGTCTATCTGATTTTGTAAGG CCAGATGATCGTCTCAACGATGTTGTTGGCAGTGCATATTATGTTGCACCTGAAGTGCTCCACAGATCGTACAATCTCGAAGCTGATATGTGGAGTACCG GTGTGATAACATACATATTATTATGCGGGAGTAGACCTTTCTGGGCAAGAACTGAATCGGGAATTTTCCGCTCTGTGCTAAGAGCTGATCCTAACTTTGA TGATTCACCTTGGCCTTCTGTGTCACCAGAAGCTAAAGATTTTGTCAAAAGGCTTCTGAACAAGGACCACAGAAAAAGAATGACTGCTGCTCAGGCTCTA ACCCACCCATGGTTACGAGATTTAAATCCAGCTGTGCCTTTGGATATTTTGATCTTCAAGTTGGTCAAGTCATATGTTCGTGCCACACCTTTCAAACGTG CAGCATTGAAGGCTCTTTCAAAAGCCATTCCTGAAGATGAGCTCGTCTATCTCAAGACTCAATTTAGTCTCTTGGAACCGAAAAATGGATCCGTATCCCT TAATAATTTCAGAGTGGCTTTGACGAGACATGTTACTGATGCCATGAAGGAATCACGGGTTCTTGACATTTTAAATGTGATGGAACCGCTCGCTCACAAG AGAATGGGGTTCGAGGAATTCTGTGCTGCTGCAATCAGCACACATCAGCTCGAAGCCCTGGAAGGATGGGAGAACATTGCAACTGAAGCCTTTGGTTTTT TTGAACAAGAAGGAAACCAGGTCATCTCGGTGGAGGAATTGGCACAGGAAATGAATTTGGGCCCTACGGCCTATTCTGCAGTCAAGGATTGGATTAGAAG CTCTGATGGGAAGTTGAGTTTTATTGGATATACCAAGTTCTTACATGGCGTGACAATGCGCACCTCGAATGCAAGACATCGATGA
AA sequence Show only first row Show all	>Potri.012G023300.1 pacid=42783265 polypeptide=Potri.012G023300.1.p locus=Potri.012G023300 ID=Potri.012G023300.1.v4.1 annot-version=v4.1 MGHCCSKDVSAVNNEVINSIKHPATPPNAATVEVAPPATNGYANSFAASPFQSPLPAGVMPSPSPARTPGRKFRWPLPPPSPAKPIMAMMRRRVQGKQQP QEGQPITVDGGGEGGGGERVAAGTGTGGLDKNFGYPKNLAAKFELGKEVGRGHFGHTCWAKGKKGELKGQPVAVKIISKAKMTTAISIEDVRREVKILKA LSGHKNIIKFYDAFEDENNVYIAMELCEGGELLDRILSRGGRYTEQDAKTIVVQILSVVAYCHLQGVSHRDLKPENFLFTSRDEDAPMRIIDFGLSDFVR PDDRLNDVVGSAYYVAPEVLHRSYNLEADMWSTGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDSPWPSVSPEAKDFVKRLLNKDHRKRMTAAQAL THPWLRDLNPAVPLDILIFKLVKSYVRATPFKRAALKALSKAIPEDELVYLKTQFSLLEPKNGSVSLNNFRVALTRHVTDAMKESRVLDILNVMEPLAHK RMGFEEFCAAAISTHQLEALEGWENIATEAFGFFEQEGNQVISVEELAQEMNLGPTAYSAVKDWIRSSDGKLSFIGYTKFLHGVTMRTSNARHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	0	1	CRK4
AT4G00900		ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDO...		Potri.014G101900 [exp]	3.46	0.8787	Pt-ECA2.1
AT4G35160			O-methyltransferase family pro...		Potri.011G059600 [exp]	4.47	0.9114	FOMT8,OOMT2.20
					Potri.004G112600 [exp]	4.47	0.8989
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	8.94	0.8933
					Potri.017G047400 [exp]	9.21	0.8843
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	10.00	0.8032
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.014G071200 [exp]	10.09	0.8671
					Potri.016G047700 [exp]	10.53	0.8969
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050600 [exp]	13.19	0.8553
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441400 [exp]	13.26	0.8672

Compare expression of checked genes

Potri.012G023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.