Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57680 112 / 4e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227000 [exp] 113 / 2e-28 AT1G57680 306 / 5e-102 unknown protein Potri.003G003500 [exp] 100 / 2e-23 AT1G57680 284 / 4e-93 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008842 [exp] 232 / 3e-74 AT1G57680 82 / 4e-17 unknown protein Lus10008924 [exp] 124 / 3e-32 AT1G57680 369 / 3e-126 unknown protein Lus10032951 [exp] 74 / 4e-16 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G023500.1 pacid=42784097 polypeptide=Potri.012G023500.1.p locus=Potri.012G023500 ID=Potri.012G023500.1.v4.1 annot-version=v4.1 ATGTTGAACATTTCTTCTATCTATGATCCATCCTATAACACCACCTTCGACTTGGCGATTCTCTACTCCATCATTGCCCTCTTCCTCCTTTCCCTCTTCT CTCTTTGCTTTGTATTTCATCTCCTATTCAAATCACAAAATTCCCATCATTTACAAAGCTTCAACTCCCTTTGGTCCGTCCGATTCCTCCTTGTCTTTAT CATCACACTTTGGGGTCTTAACGAGTTTTTTCGCTTACCCTTATTTCGTAAACAACATCTCTACCCTTTTTTTCCTTCTTTAACCCTATCACAACAAGAA AGTCTTTGCAAAGTCCATGTTGTTCTCTCATTAGGGTTATTAGAACCTGGTTTCCTGGTGATCCTCCTTTTTCTTATGAACATATCCATCAAGAGAAAAA CCCCACGGGGTACTTGGGTTCATGCCTTTCTTTGGTCTGCATGTATTCCCATCCTCACTATACAATTTGTGTTTGTGTTCACTTCGATGGTAAAGATGCC ATCTATTTTTCATCGAAGTTCAGTTGTTTTCAAGAATAATTTTGGGGTGGAAATTGTGATGTGCACGTACCCTCTAATAAGTTGCATCATATTTGGTGCT TTTGGGGTTTGGTACACTTTGTTCTTCTTCTTGTCATGTTTCAAGGTGGTCACCCTCGCAATCAACAAAGGGTTAAGAGCTAGAATATATAGCCTAGCTT TTGTGGTGATGGTAATGTTGCCATTAGAGATCTTGTTTCTTGTATTGTCAGCTTTTTGGAGACCTGAGGAGACCATATACGGCGCATTTTCTTTCCTTGT TTTTTTCACAACATTAGCTATTGCCGCCGTTGGAGAGGGCATAATGATAATTAGACCTATCATTGATTCGTTGGCTGCCGGAGGAACCACTTCCCTGTTT CCACAGAAGCAGGAAGCTGGCCAGAGGTATCTGAGTGTAATAATACAAAGTTGA
AA sequence Show only first row Show all	>Potri.012G023500.1 pacid=42784097 polypeptide=Potri.012G023500.1.p locus=Potri.012G023500 ID=Potri.012G023500.1.v4.1 annot-version=v4.1 MLNISSIYDPSYNTTFDLAILYSIIALFLLSLFSLCFVFHLLFKSQNSHHLQSFNSLWSVRFLLVFIITLWGLNEFFRLPLFRKQHLYPFFPSLTLSQQE SLCKVHVVLSLGLLEPGFLVILLFLMNISIKRKTPRGTWVHAFLWSACIPILTIQFVFVFTSMVKMPSIFHRSSVVFKNNFGVEIVMCTYPLISCIIFGA FGVWYTLFFFLSCFKVVTLAINKGLRARIYSLAFVVMVMLPLEILFLVLSAFWRPEETIYGAFSFLVFFTTLAIAAVGEGIMIIRPIIDSLAAGGTTSLF PQKQEAGQRYLSVIIQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57680			unknown protein		Potri.012G023500 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	1.73	0.8457
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	4.89	0.8468
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	5.09	0.8755
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	8.71	0.8300
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468900 [exp]	12.12	0.8010
					Potri.019G062666 [exp]	15.49	0.8134
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	21.23	0.7914
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	22.47	0.8204
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.012G023450 [exp]	23.91	0.6915
AT4G32105			Beta-1,3-N-Acetylglucosaminylt...		Potri.006G257600 [exp]	28.77	0.5672

Compare expression of checked genes

Potri.012G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.