Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 147 / 2e-43 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 142 / 2e-41 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT2G22430 116 / 6e-31 HD ATHB6 homeobox protein 6 (.1) AT3G01470 114 / 2e-30 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 114 / 3e-30 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 114 / 4e-30 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G69780 109 / 3e-28 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G15150 106 / 5e-27 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 103 / 3e-26 HD ATHB20 homeobox protein 20 (.1) AT1G26960 93 / 2e-22 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103000 [exp] 148 / 8e-44 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.002G176300 [exp] 147 / 1e-43 AT2G46680 219 / 1e-71 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.001G083700 [exp] 130 / 1e-37 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.007G097100 [exp] 119 / 7e-32 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.015G065400 [exp] 119 / 1e-31 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G071900 [exp] 118 / 3e-31 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.012G070900 [exp] 117 / 4e-31 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 108 / 4e-28 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.008G194400 [exp] 107 / 2e-27 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032952 [exp] 159 / 7e-48 AT2G46680 142 / 1e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008840 [exp] 155 / 2e-46 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10030214 [exp] 140 / 2e-40 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 121 / 1e-32 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10042180 [exp] 114 / 5e-30 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 114 / 7e-30 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 112 / 3e-29 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 111 / 4e-29 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 110 / 7e-29 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 110 / 1e-28 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.012G023700.1 pacid=42783778 polypeptide=Potri.012G023700.1.p locus=Potri.012G023700 ID=Potri.012G023700.1.v4.1 annot-version=v4.1 ATGAGCTATCAAATACTGATAGAGGGAGTTGTGGATTTTGACCAGGCAGTAGCAGGAGATCATGCAGAAGCAGCTGAAAGTTTTGCCTGTGTTGATGATG ATGATCATCAGCAGCAGCTAGAACAAATTTCAAGGAGGAAGAAGAAGAAGAAGAAGGGAAGCAAGATGAATACTAGGAGGTTTAGTGATGAACAGGTTAG GTCACTAGAGTCGATGTTTGAGTCAGAGACAAAGCTGGAGCCCAGAAAGAAGATGCAACTAGCAAGAGAACTCGGGCTGCAGCCTCGTCAGGTTGCTATA TGGTTTCAGAACAGAAGAGCTAGGTGGAAGACAAAACAGATGGAGCAAAAGTACAAGACTTTGAAAGCTAGTTATGACAACTTAGCCTCAAGTTATGAGT CCTTGAAGAATGAAAGAGAGTCCTTACTTTTACAGTTGCAGACGGTAAGTAATCAGCTTGGCAACCCTTGTAAGGGGTTGGAAAGATGTGACAGAGGCAT TGATGAAGTTCTTCATGATGGAATCACCAACCTTGAGGTTGAAGCGCAGCAAGGACAAGACAACAGTACTATAATGGCCAACGTGTGTGATGATATGAGC ATGGGAAATGGACATTCTGGTGATCAAGGACAAGGATTTCTCTATACGGGTTCCCCAGAATACAGTGATGGGACATTAGCATCAGCCTATGAGAAATGCT ACAGCACTGATTCAGGGGCCCCGTTTGATCTATCATGGAACAATTCGTATTGTTTTAGTTTCAGGAGTTGA
AA sequence Show only first row Show all	>Potri.012G023700.1 pacid=42783778 polypeptide=Potri.012G023700.1.p locus=Potri.012G023700 ID=Potri.012G023700.1.v4.1 annot-version=v4.1 MSYQILIEGVVDFDQAVAGDHAEAAESFACVDDDDHQQQLEQISRRKKKKKKGSKMNTRRFSDEQVRSLESMFESETKLEPRKKMQLARELGLQPRQVAI WFQNRRARWKTKQMEQKYKTLKASYDNLASSYESLKNERESLLLQLQTVSNQLGNPCKGLERCDRGIDEVLHDGITNLEVEAQQGQDNSTIMANVCDDMS MGNGHSGDQGQGFLYTGSPEYSDGTLASAYEKCYSTDSGAPFDLSWNNSYCFSFRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.012G023700 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.004G217200 [exp]	1.00	0.9508
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	1.41	0.9505
					Potri.008G181801 [exp]	3.46	0.9258
AT5G02420			unknown protein		Potri.009G003400 [exp]	3.46	0.9249
AT3G62550			Adenine nucleotide alpha hydro...		Potri.002G196700 [exp]	6.92	0.9041
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	7.41	0.9184
AT2G17650			AMP-dependent synthetase and l...		Potri.005G099500 [exp]	8.12	0.8734
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	9.00	0.9037
AT5G18130			unknown protein		Potri.013G057200 [exp]	10.58	0.9045
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	11.74	0.9151

Compare expression of checked genes

Potri.012G023700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.