Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49350 601 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 465 / 4e-159 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 457 / 5e-156 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 450 / 9e-154 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 132 / 1e-32 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 124 / 1e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 123 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 123 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 119 / 9e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 118 / 1e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007400 [exp] 823 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 633 / 0 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 632 / 0 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 130 / 9e-32 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 128 / 9e-32 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 128 / 3e-31 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.007G132900 [exp] 127 / 1e-30 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 125 / 1e-30 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.017G023200 [exp] 125 / 4e-30 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022356 [exp] 684 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 618 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 607 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 479 / 5e-165 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 412 / 2e-139 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 133 / 1e-34 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 133 / 1e-32 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 132 / 1e-32 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10038091 [exp] 130 / 9e-32 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10006646 [exp] 127 / 8e-31 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.012G024500.1 pacid=42783855 polypeptide=Potri.012G024500.1.p locus=Potri.012G024500 ID=Potri.012G024500.1.v4.1 annot-version=v4.1 ATGAAAACTCTAAAACGAAGTCCAACGTCGCCGTCTTCGTCAAATTCATCTTCTCCTCCGTCGTCGTCGTCAAGTTTGTCGTCTTCGTCGTGGATTCATT TGCGTTCGATTCTCTTTGTTGTTAATTCCTCCTCACCGGCTTATTGTTCCTCCTCTTCCTCTTCTGATCGGGGTCGACTGAAGTCACCATGGTCTCGAAG GAAAAGAAAACGTGCCCTTACACCTAGGCAATGGAAAAGCTTGTTTACATCAGACGGGAAACCCAGAGATGGCGGGGTTAAGTTTTTGAAAAAAGTTCGA AGCGGAGGTATTGATCCATGTATTAGAGCAGAGGTCTGGCCATTCCTCCTTGGAGTATATGACTTGAATAGTTCCACAGAAGAAAGAGAGATCATCAGAA CCCAGAAAAGAAAGGAATATGAGAAATTCCGCAGACAGTGCAGGCGATTTCTCAAACGCATCAATGAGTGCTCCAAAGGAACTAGTGAAACAAGCTGTAT TGAGGATAGTGGAAGTCCCACACAAGATTCTGACTCTTCAAGTTATGAAGATGTGGTTAGTGCTAGGGAGTCTCTTTCAAGCGAGGAAAGGAGTCCAGAT GTTGAGGACTCTGATGACCCCTCCAGTGCATTGTTGGAAGGTGATGATGGTTCAGGTCAAGCCACAAACACTGATGCCTCTGCACTAAACACCGAGTCTT CTGACTCAGACTCTTCTGAAGACCCTGAAGTCATTCAGGCTTCCTCCTCATCTGAGGGCAGGGAAGAGAATGATCCTGATGTGCCTTTGAAAGAGAACAT CTCTCCCTCTAGGGCTGATCTCCATCCAAACCAATGCTCTGGTGAAAATTTTGCCACGTGGCAGCGGATCATTCGTGTTGATGCAGTGCGAGCCAATTCT GAATGGATTCCGTATTCCCCATCGCAGGCAACAGTTTCAGAGTTAAGAGCATGCCGTGCTGCAGAGGCTGTTGGGTTGAAGGACTATGATCACCTGGAAC CCTGCAGAGTTTTCCATGCTGCAAGACTAGTTGCTATTCTCGAAGCCTATGCAGTCTATGACCCTGAAATTGGGTATTGCCAGGGCATGAGTGATCTACT TTCCCCAATAATTGCAGTGGTCACAGAGGATCATGAAGCTTTCTGGTGTTTTGTGGGTTTCATGAGGAAGGCTAGGCATAATTTTAGGCTTGATGAAGTG GGGATCCGAAGGCAACTCAATATTGTTTCCAAGATTATAAAATGCAAAGACTCCCACCTCTACAGGCACTTGGAGAAGCTCCAGGCTGAGGATTGCTTTT TTGTTTATAGGATGGTGGTTGTGCTGTTCAGGAGAGAATTGACATTTGAACAGACAATTTGCCTCTGGGAGGTGATGTGGGCAGATCAGGCAGCTATAAG GGCTGGTATTGGAAAGTCTGCATGGAGCAGGATAAGGCAGCGAGCACCACCAACAGAGGATTTATTGCTTTATGCTATTGCGGCTTCTGTGTTACAGAAA AGGAAATTAATCATTGAGAAATATAGCAGCACGGATGAGATCTTAAGGGAATGCAATAGCATGTCCGGGCAACTTGATGTATGGAAACTTCTCGACGACG CACATAATCTGGTGGTGAACCTTCATGACAAGATAGAGACACCCTTCTGA
AA sequence Show only first row Show all	>Potri.012G024500.1 pacid=42783855 polypeptide=Potri.012G024500.1.p locus=Potri.012G024500 ID=Potri.012G024500.1.v4.1 annot-version=v4.1 MKTLKRSPTSPSSSNSSSPPSSSSSLSSSSWIHLRSILFVVNSSSPAYCSSSSSSDRGRLKSPWSRRKRKRALTPRQWKSLFTSDGKPRDGGVKFLKKVR SGGIDPCIRAEVWPFLLGVYDLNSSTEEREIIRTQKRKEYEKFRRQCRRFLKRINECSKGTSETSCIEDSGSPTQDSDSSSYEDVVSARESLSSEERSPD VEDSDDPSSALLEGDDGSGQATNTDASALNTESSDSDSSEDPEVIQASSSSEGREENDPDVPLKENISPSRADLHPNQCSGENFATWQRIIRVDAVRANS EWIPYSPSQATVSELRACRAAEAVGLKDYDHLEPCRVFHAARLVAILEAYAVYDPEIGYCQGMSDLLSPIIAVVTEDHEAFWCFVGFMRKARHNFRLDEV GIRRQLNIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQTICLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTEDLLLYAIAASVLQK RKLIIEKYSSTDEILRECNSMSGQLDVWKLLDDAHNLVVNLHDKIETPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Potri.012G024500 [exp]	0	1
					Potri.013G042750 [exp]	21.90	0.6665
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.018G109500 [exp]	49.79	0.6608
					Potri.010G228550 [exp]	50.29	0.6342
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	65.48	0.6654
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	100.30	0.6212
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.018G071400 [exp]	117.83	0.5972	AKT1.2
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	209.28	0.5856
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.007G067600 [exp]	210.67	0.6002
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	240.25	0.5818

Compare expression of checked genes

Potri.012G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.