Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 857 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 827 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 751 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 615 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT5G41000 601 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 599 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT3G17650 561 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 556 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 127 / 2e-33 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055224 [exp] 1023 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 755 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 717 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.017G151800 [exp] 611 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 610 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 606 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 605 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 603 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.004G069300 [exp] 570 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022360 [exp] 870 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 830 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 806 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 802 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 789 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 773 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 771 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10032950 [exp] 755 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10013323 [exp] 618 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10012549 [exp] 603 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.012G024700.6 pacid=42783690 polypeptide=Potri.012G024700.6.p locus=Potri.012G024700 ID=Potri.012G024700.6.v4.1 annot-version=v4.1 ATGAATATGAACATGGAAGAAATGAAAGAGATTGAGAGGGTTGGGGGAGAAGGCATGGAAGAAGTTAGAGATGAGCCAGAGGATATCAAGAGGATTGCTC CATGGACTCAACAGATTACAGTTAGGGGAATTGTTGCTAGCATAGCAATTGGGATCATATACAGTGTTATAGTCATGAAGCTGAATCTCACCACTGGTCT AGTCCCAAATCTCAATGTCTCTGCTGCTCTTCTTGCATTTGTGTTCCTCAGAACATGGACTAAGCTCCTCTCAAAGGCTGGAATTGTAACCAGTCCCTTT ACCCGACAAGAGAATACCATAGTTCAAACTTGTGCTGTTGCTTGTTATAGCATTGCTGTTGGAGGTGGTTTTGGATCTTATCTACTGGGTTTGAATAGGA AGACATATGAGCAAGCAGGGGTTGATACAGAGGGGAATACTCCTGGGAGCACTAAGGAACCTGGGATTGGTTGGATGACTGGTTTCCTCTTTGTAAGCAG CTTCGTTGGGCTACTTGCTCTAGTTCCTCTGCGAAAGATCATGATAATAGATTACAAATTGAGTTATCCAAGTGGAACTGCAACTGCAGTTCTCATCAAT GGGTTCCACACTCCTACAGGAGACAAGATGGCTAGGAAACAGGTGCATGGGTTCATGAAGTTCTTTTCATTAAGTTTCCTGTGGGCTTTCTTTCAGTGGT TCTATTCTGGTGGAGAAAAATGTGGATTTTCTCAGTTCCCTGCGTTGGGGTTGAAAGCTCGGAAAAATTCGTTTTACTTCGATTTCAGCATGACTTATAT TGGTGCGGGAATGATCTGTTCCCATCTTGTGAATTTGTCTTTGCTTCTCGGAGCAGTGCTTTCGTGGGGATTAATGTGGCCGTTGATAGGTGGGCTTAAA GGAGAGTGGTTCCCTTCAACTTTATCAGAAAGTAGTATGAAGAGTCTAAATGGCTACAAGGTTTTCATTTCTATTTCTCTGATCCTAGGAGATGGCCTCT ACAATTTTCTCAAGATACTCTATTTCACTGCCAGGAGTATGCGTGCTAGAGCAAAAGCTAACAAACTCAAAACAGAAGACAAAAATCAAGCTCTTGATGA TCTTCAAAGAAATGAAATCTTCTTAAGAGAGGGCATCCCTCTTTGGGTAGCATGTTTAGGGTACATCACCTTCTCCATCATTGCCATCATTGCCATCCCT TTCATGTTTCCGGAGCTAAAGTGGTACTATGTAGTTGTTGCCTACATTCTAGCTCCCTCTCTTAGCTTCTGCAATGCTTATGGGGCTGGTCTAACTGACA TGAACATGGCTTACAATTATGGAAAGGTGGCCCTCTTTTTACTCGCAGCCTTGGCAGGTAAAAACAACGGTGTAGTTGCAGGACTGGTGGGCTGTGGCCT GATTAAATCCATTGTTTCCATCTCTTCTGATTTGATGCATGATTTCAAGACTGGTCATCTCACTCTCACTTCTCCTAGATCAATGCTTCTTAGCCAGGCC ATTGGGACTGTCATAGGCTGTGTTGTAGCTCCGGTCACGTTCTTCCTCTTCTACAAGGCTTTTGATGTCGGAAACCCCGATGGTGAATACAAAGCTCCCT ATGCCATTATCTATAGAAACATGGCAATTCTTGGTGTTGAAGGCTTCTCTGCCCTTCCCCAGCACTGCTTGCAGCTTTGCTATGGTTTTTTTCGCCTTTG CTATACTGGCCAACTTGTCGAGAGATCTTTCTCCCAACAATATTGGGAAATATGTTCCTCTCCCAATGGCTATGGCAGTGCCTTTCCTCGTTGGAGCCTA CTTCGCAATTGA
AA sequence Show only first row Show all	>Potri.012G024700.6 pacid=42783690 polypeptide=Potri.012G024700.6.p locus=Potri.012G024700 ID=Potri.012G024700.6.v4.1 annot-version=v4.1 MNMNMEEMKEIERVGGEGMEEVRDEPEDIKRIAPWTQQITVRGIVASIAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFLRTWTKLLSKAGIVTSPF TRQENTIVQTCAVACYSIAVGGGFGSYLLGLNRKTYEQAGVDTEGNTPGSTKEPGIGWMTGFLFVSSFVGLLALVPLRKIMIIDYKLSYPSGTATAVLIN GFHTPTGDKMARKQVHGFMKFFSLSFLWAFFQWFYSGGEKCGFSQFPALGLKARKNSFYFDFSMTYIGAGMICSHLVNLSLLLGAVLSWGLMWPLIGGLK GEWFPSTLSESSMKSLNGYKVFISISLILGDGLYNFLKILYFTARSMRARAKANKLKTEDKNQALDDLQRNEIFLREGIPLWVACLGYITFSIIAIIAIP FMFPELKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFLLAALAGKNNGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQA IGTVIGCVVAPVTFFLFYKAFDVGNPDGEYKAPYAIIYRNMAILGVEGFSALPQHCLQLCYGFFRLCYTGQLVERSFSQQYWEICSSPNGYGSAFPRWSL LRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G024700 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.011G055224 [exp]	1.00	0.9913
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G018805 [exp]	2.44	0.9347
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G028300 [exp]	4.24	0.8253
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	6.92	0.8766
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G219200 [exp]	9.48	0.6296
					Potri.012G028432 [exp]	10.72	0.8437
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	13.00	0.7251
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	15.23	0.7593
AT1G19230			Riboflavin synthase-like super...		Potri.006G137300 [exp]	16.49	0.6196
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	18.97	0.7518

Compare expression of checked genes

Potri.012G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.