Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 343 / 3e-103 AtRLP35 receptor like protein 35 (.1) AT3G05660 340 / 2e-102 AtRLP33 receptor like protein 33 (.1) AT3G11010 334 / 5e-100 AtRLP34 receptor like protein 34 (.1) AT1G47890 335 / 1e-99 AtRLP7 receptor like protein 7 (.1) AT1G45616 333 / 7e-99 AtRLP6 receptor like protein 6 (.1) AT3G25020 330 / 8e-99 AtRLP42 receptor like protein 42 (.1) AT4G13920 328 / 8e-98 AtRLP50 receptor like protein 50 (.1) AT5G27060 328 / 2e-97 AtRLP53 receptor like protein 53 (.1) AT3G25010 326 / 2e-97 AtRLP41 receptor like protein 41 (.1) AT2G32680 311 / 9e-92 AtRLP23 receptor like protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055200 [exp] 1399 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.012G028101 [exp] 1296 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G014625 [exp] 1293 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G029000 [exp] 1269 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G010445 [exp] 1256 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G027400 [exp] 1249 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.011G054500 [exp] 1216 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G026900 [exp] 1205 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G008911 [exp] 1205 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 351 / 2e-106 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026415 [exp] 353 / 8e-106 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10024721 [exp] 348 / 1e-105 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003389 [exp] 305 / 2e-88 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 299 / 5e-86 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10042239 [exp] 298 / 1e-85 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 296 / 4e-85 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10011039 [exp] 294 / 7e-83 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 262 / 2e-74 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10014910 [exp] 262 / 3e-74 AT1G71400 357 / 7e-110 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G025100.2 pacid=42784018 polypeptide=Potri.012G025100.2.p locus=Potri.012G025100 ID=Potri.012G025100.2.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCTCAATCTCTCTCGTTCTTTCTGCTTCTCTTCCATTTCCATTCAACAATTTCATCTCCACTCTCCTCAAATTACC AATCTCTTTCTCTCCTTCAATTCAAACAATCCTTCTCCATTGATAGTTCTGCTTCATCGGAGTACTGTCAATATCCCTTTCCAAAAACAGAGTCATGGAA AGAGGGTACAGACTGCTGCTTGTGGGATGGGATCACTTGTGACCTGAAAACCGGGCATGTCACTGCACTGGACCTCTCTTGCAGCATGCTTTACGGCACC CTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAAAAGCTCGACCTCTCTTTCAATGATTTCAACTCCTCCCATATTTCTTCTCGATTTGGCC AGTTCTCCAATCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCAGAAATCTCTCACCTCTCCAAAATGGTTTCTCTTGATCT CTCTTGGAACGACGATGTGAGTTTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGCACTCGATTTGAGTGGGGTAAACATG TCACTAGTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCGCTCATACTCTATTCCTGTGGATTGCAAGGAAAACTCCCATCCTCGATGG GGAAATTTAAGCACCTGCAGTACTTGGATCTTGGAGGGAACAATCTTACTGGTTCAATTCCATATGATTTTGATCAACTCACCGAGTTGGTTTCACTTCG TCTCTCTGAAAACTTCTATCTAAGTCCAGAACCAATTTCTTTTGAAAAGCTTGTTCAAAACCTAACCAAGCTAAGAGATCTCGCTTTGGATTATGTAAAT ATGTCTCTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTGTCATCTCTTTCCCTTGGGGGTTGTCGATTGCAGGGGAAGTTCCCGGGTAACA TCTTTCTCCTCCCATACCTTGAATCACTGGATCTGTCATACAACGAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTCTCTCAGTT GGATCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTACTCTAAAGTCATTAGAATATATGTATCTTAGTAATAGTAATATTATA AGATCAGATCTAGCCCCGCTTGGTAATCTTACACATCTTATTTATTTAGACCTCTCAATTAATAATTTGAGCGGTAAGATCCCATCGTCACTTGGAAACC TTGTACACCTCCATTCCTTGCTTCTCGGTTCTAATAATTTTGTGGGTCAAGTTCCAGATTCTTTGAATAGCCTAGTCAATCTTTCATATTTAGATTTATC AAATAATCAACTAATAGGCCCTATCCATTCTCAATTAAATACCCTTTCAAATCTACAATCTCTGTATTTATCCAATAACTTGTTCAATGGAACAATACCA TCATTTTTGCTAGCTCTTCCTTCTTTACAGCATCTTGATCTTCATAACAATAATCTCATAGGCAATATAAGTGAACTCCAACATTATTCATTGGTATACC TTGATTTGAGCAATAACCACTTGCACGGTACAATCCCAAGTTCGGTTTTCAAACAACAGAACTTGGAAGTCCTTATTCTTGCATCCAATAGTGGATTGAT AGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATTCCTTCGGGTCCTGGACTTGTCCACCAGCAGCTTTAGTGGTTCTATGCCACTATGTTTGGGGAAC TTCAGCAACATGCTCTCGGTATTGCATCTAGGCATGAACAATCTTCAGGGCACCATCCCTTCAATATTTTCAAAGGATAATAGCTTGGAATATCTCAACC TCAATGGAAATGAATTAGAAGGAAAAATATCACCGTCTATCATCAACTGCACAATGTTGCAAGTTCTTGATCTTGGCAACAATAAGATTGAGGATACATT TCCCTGCTTTCTAGAAACGCTTCTAGAGCTGCAAATTCTTGTCCTAAAATCCAATAAACTGCAAGGTTTTGTGAAGGGTCCGACTGCATATAATTCCTTC TCTAAATTACGGATTTTTGACATCTCTGACAATGATTTTAGTGGATCATTGCCAACTGGGTATTTCAATAGTCTTGAAGCAATGATGGCTTCCGATCAAA ACATGATTTACATGAGAGCAACAAATTACTCTAGCTATGTCTATTCCATAGAAATTACATGGAAAGGTGTAGAAATTGAGTTTCCAAAGATACAAAGTAC CATCAGAATACTCGATTTGTCAAATAATAATTTCACCGGAGGAATTCCAAAGGTAATCGGAAAGCTTAAAGCACTCCAACAACTCAACCTCTCTCATAAT TCCCTTACAGGTCATATCCAATCATCATTAGGAAATTTGACTAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGAAGGATTCCAACGCAGC TGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAGTTCGAGGGGCGTATACCAAGTGGAGAGCAGTTCAACACCTTTACTGCAAGCTC ATTTGAAGGAAACTTAGGTTTATGTGGATTTCAAGTACTAAAAGAATGCTACGGTGATGAGGCACCATCATTGCCGCCATCAAGCTTTAATGAAGGAGAT GATTCAACATTGTTTGGAGATGGATGTGGATGGAAAGCTGTGACAATGGGGTATGGATGTGGGTTTGTGTTTGGAGTTGCAACAGGATACTTTGTGTTAA GAACAAAAAAATATTTATGGTTTCTTAGGATGGTTGAAGATAAATGGAATCTCGAGGTTAATTGGGCGTTACTTCTATGA
AA sequence Show only first row Show all	>Potri.012G025100.2 pacid=42784018 polypeptide=Potri.012G025100.2.p locus=Potri.012G025100 ID=Potri.012G025100.2.v4.1 annot-version=v4.1 MGFSPLSLSQSLSFFLLLFHFHSTISSPLSSNYQSLSLLQFKQSFSIDSSASSEYCQYPFPKTESWKEGTDCCLWDGITCDLKTGHVTALDLSCSMLYGT LLPNNSLFSLHHLQKLDLSFNDFNSSHISSRFGQFSNLTHLNLSGSDLAGQVPSEISHLSKMVSLDLSWNDDVSLEPISFDKLVRNLTKLRALDLSGVNM SLVVPDSLMNLSSSLSSLILYSCGLQGKLPSSMGKFKHLQYLDLGGNNLTGSIPYDFDQLTELVSLRLSENFYLSPEPISFEKLVQNLTKLRDLALDYVN MSLVAPNSLTNLSSSLSSLSLGGCRLQGKFPGNIFLLPYLESLDLSYNEGLTGSFPSSNLSNVLSQLDLSNTRISVYLENDLISTLKSLEYMYLSNSNII RSDLAPLGNLTHLIYLDLSINNLSGKIPSSLGNLVHLHSLLLGSNNFVGQVPDSLNSLVNLSYLDLSNNQLIGPIHSQLNTLSNLQSLYLSNNLFNGTIP SFLLALPSLQHLDLHNNNLIGNISELQHYSLVYLDLSNNHLHGTIPSSVFKQQNLEVLILASNSGLIGEISSSICKLRFLRVLDLSTSSFSGSMPLCLGN FSNMLSVLHLGMNNLQGTIPSIFSKDNSLEYLNLNGNELEGKISPSIINCTMLQVLDLGNNKIEDTFPCFLETLLELQILVLKSNKLQGFVKGPTAYNSF SKLRIFDISDNDFSGSLPTGYFNSLEAMMASDQNMIYMRATNYSSYVYSIEITWKGVEIEFPKIQSTIRILDLSNNNFTGGIPKVIGKLKALQQLNLSHN SLTGHIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQFEGRIPSGEQFNTFTASSFEGNLGLCGFQVLKECYGDEAPSLPPSSFNEGD DSTLFGDGCGWKAVTMGYGCGFVFGVATGYFVLRTKKYLWFLRMVEDKWNLEVNWALLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G025100 [exp]	0	1
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Potri.007G097500 [exp]	1.41	0.9162
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	3.74	0.9184
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	5.74	0.8978
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G005200 [exp]	6.92	0.8596
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G055200 [exp]	9.38	0.8919
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	10.95	0.8893
AT3G15518			unknown protein		Potri.011G123600 [exp]	12.32	0.8358
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	12.44	0.8897
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G028600 [exp]	13.26	0.8542
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	15.90	0.8599

Compare expression of checked genes

Potri.012G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.