Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33060 357 / 1e-110 AtRLP27 receptor like protein 27 (.1) AT3G28890 342 / 6e-106 AtRLP43 receptor like protein 43 (.1.2) AT3G05660 335 / 1e-101 AtRLP33 receptor like protein 33 (.1) AT4G13810 331 / 1e-101 AtRLP47 receptor like protein 47 (.1.2) AT1G71400 326 / 2e-98 AtRLP12 receptor like protein 12 (.1) AT3G05650 321 / 1e-96 AtRLP32 receptor like protein 32 (.1) AT3G11080 318 / 9e-95 AtRLP35 receptor like protein 35 (.1) AT2G33050 312 / 7e-94 AtRLP26 receptor like protein 26 (.1) AT3G05360 311 / 9e-94 AtRLP30 receptor like protein 30 (.1) AT5G40170 297 / 2e-88 AtRLP54 receptor like protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G026600 [exp] 1431 / 0 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G009400 [exp] 1405 / 0 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.012G019850 [exp] 1270 / 0 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.012G020600 [exp] 970 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G008300 [exp] 954 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 949 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G026000 [exp] 941 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G025700 [exp] 883 / 0 AT1G71400 239 / 1e-68 receptor like protein 12 (.1) Potri.012G008911 [exp] 856 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 359 / 9e-111 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 353 / 2e-108 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 316 / 2e-94 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10004310 [exp] 309 / 2e-92 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10026415 [exp] 296 / 6e-86 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10004313 [exp] 288 / 7e-85 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10003389 [exp] 290 / 5e-84 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 286 / 2e-82 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011039 [exp] 288 / 8e-82 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10002214 [exp] 256 / 1e-75 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G025300.1 pacid=42784229 polypeptide=Potri.012G025300.1.p locus=Potri.012G025300 ID=Potri.012G025300.1.v4.1 annot-version=v4.1 ATGAAGAATTATTCATTATCCCTCGCTCAATTTCCCTGTTCCATTTTGTTTCTCTTGTATTTTCTTACAACAATTTCATCATCCTTCTCCTCAAATTTTT CCTCTTCTACTCAGTTGTGTAGTCATCACCAAGCTCTTTCTCTGCTTCAATTCAAACAATCTTTTTCCATTCAGAGGTCTCCTTTTTGGTTTGCTAGAAA TTATCAATATGATCAATATCCCAAGACAGAGTCATGGAAAGAGGGTACAGACTGCTGCTTGTGGGATGGCGTCACTTGTGACCTGAAAACCGGGCAAGTG ACTAAACTGGACCTCTCTTTCAGCATGCTTCACGGAACCCTGCGTTCCAATAATTCTCTCTTCTCTCTGCATCATCTTCAAAAGCTCGTCCTCTCTTACA ACGATTTCAACTTCTCCAATATCTCTTCTCAATTTGGCCAGTTTTCCAATTTGATGCATCTTAACCTAACTCATTCAAATTTTGCAGGCCAAGTTCCATC GGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATATCTCAAACAAACATCTAAGTCTAGAAACAGTCTCTTTTGCCAAGATTGTTCAAAACCTTACC AAGCTAAGAGTACTCTATTTGGATTATATAGATATGTCTTTGGTTGCACCTAATTCCTTAACGAATTTGTCCTCTTCCTTGACATTGCTTTCACTTGTGG ATTGTGGATTGCAAGGGGAGTTCCCAAGTAACATCTTTCTTCTACCAAACCTAGACTCCCTCATTTTGGCAGACAACAAAGGCCTCACTGGCTCTTTTCC TTCATCCAATGTGAGTAATGTCCTCTGGCAGTTAGAGCTTTCTGATACAAGAATTTCAGTTTATTTAGAAAATGACTTCATCAGTAAGCTCAAGTCGTTA GAATACATATGGCTTCGCAATTGTGACATTCGAAGGACAAATATAGCTCTGCTTGGTAATCTCACACAGCTTAGAATGTTAGACCTCTCACATAATAATT TGAGCAGTGAAATCCCATCATCATTTGAAAACCTTTCAAATCTAGAGAGTCTATATTTATTTAGTAACTTATTCAATGGGACAATACCATCCTTTTTGTT TGCTCTTCCTTCTTTAGGTTATTTGGACCTTCATAACAATCATTTCATAGGCCATATAAGTGAATTCCAATATAATTCGTTGGAATACCTTGATTTGAGC AATAATCACTTCCATGGTCCAGTCCCAAGCTCAATTTTCAAACAAGAGTATTTGGAAGTCCTTATTCTTGCGTCCAACAATAAATTGTCAGGTGAGATTT CTTATTCCATATGCAAGCTGAAATACCTTGAAATCCTTGACTTGTCCAACAACAGTCTGAGTGGTTCTATTCCACAATGTTTGAGCAACTTCAGCAACAC TCTCTCAATTTTGAATCTAGGCATGAACAATCTTCAAGGCACTATCTCTTTAGCATTCTCAGAGGGGAATAGCTTGGGATATCTCATCCTCAATGACAAT GAATTGGAAGGGGAAATACCATCATCTATCATCAATTGCACAATGTTGGAAGTTCTTGATCTTGGCAACAATAAGATTAAGGATACATTCCCCCATTTCC TAGAAAGGCTTCCAAAGTTGCAGGTTCTTGTTCTAAAATCCAATAAACTCCAGGGTTTTGTGAAGGATCCGACTACTTATAATTCATTCTCTAAATTACA TATTTTTGACATCTCCAGCAATAATTTGAGTGGACCATTACCAACAGGGTTTTTGAATAGTCTTGAAGCAATGATGGCCTCGGATCAAAATAGGATTTAC ATGACATCAAACAATTACTATGGCTTTGCCGATATTTATGCCTATTCCGTAGAAATGACGTGGAAAGGATCGGAATTTGAGTTTGCAAAAGTTCAAGGTA TCCTCAGAGTACTTGATTTGTCAAGTAATAGTTTCACCGGTGAGATTCCAAAATTGATCGGAAAGCTTAAAGGACTCCAACAACTTAACCTCTCTCACAA TTACCTTACTGGTCATATCCAATCATCATTAGGAATTTTGAACAATCTAGAATCATTAGATCTATCTTCAAATTTGCTCACCGGAAGGATTCCTATACAG CTGGTAGATCTAACATTTCTCCAAGTCTTAGACCTTTCACATAACCGGCTTGAAGGACCCATACCCAAAGGAAAGCAGTTCAACACGTTTGATCATCGCT CATTCGAAGGAAACTCTGGTTTGTGTGGATTTCCAATGCCAGAAGAATGTAGCAATGGCGAGGCACCACCATTACCACCATCAAACTTTATTGCAGGAGA TGATTCAACATTGCTTGAAGATGGGTTTGGATGGAAAGCTGTGGCAATTGGGTATGGATGTGGGTTTATGTTTGGGGTCATAATGGGATATGTTGTGTTT AAAACAAGAAGACCTGCATGGTTTCTGAAAATGGTTGAAGATCAATGGAGTCTTAATGCAAGCAGAACAAAGAAGAATGCTAGTAGAAATGGTGCAAGAA GAAAATAA
AA sequence Show only first row Show all	>Potri.012G025300.1 pacid=42784229 polypeptide=Potri.012G025300.1.p locus=Potri.012G025300 ID=Potri.012G025300.1.v4.1 annot-version=v4.1 MKNYSLSLAQFPCSILFLLYFLTTISSSFSSNFSSSTQLCSHHQALSLLQFKQSFSIQRSPFWFARNYQYDQYPKTESWKEGTDCCLWDGVTCDLKTGQV TKLDLSFSMLHGTLRSNNSLFSLHHLQKLVLSYNDFNFSNISSQFGQFSNLMHLNLTHSNFAGQVPSEISHLSKLVSLDISNKHLSLETVSFAKIVQNLT KLRVLYLDYIDMSLVAPNSLTNLSSSLTLLSLVDCGLQGEFPSNIFLLPNLDSLILADNKGLTGSFPSSNVSNVLWQLELSDTRISVYLENDFISKLKSL EYIWLRNCDIRRTNIALLGNLTQLRMLDLSHNNLSSEIPSSFENLSNLESLYLFSNLFNGTIPSFLFALPSLGYLDLHNNHFIGHISEFQYNSLEYLDLS NNHFHGPVPSSIFKQEYLEVLILASNNKLSGEISYSICKLKYLEILDLSNNSLSGSIPQCLSNFSNTLSILNLGMNNLQGTISLAFSEGNSLGYLILNDN ELEGEIPSSIINCTMLEVLDLGNNKIKDTFPHFLERLPKLQVLVLKSNKLQGFVKDPTTYNSFSKLHIFDISSNNLSGPLPTGFLNSLEAMMASDQNRIY MTSNNYYGFADIYAYSVEMTWKGSEFEFAKVQGILRVLDLSSNSFTGEIPKLIGKLKGLQQLNLSHNYLTGHIQSSLGILNNLESLDLSSNLLTGRIPIQ LVDLTFLQVLDLSHNRLEGPIPKGKQFNTFDHRSFEGNSGLCGFPMPEECSNGEAPPLPPSNFIAGDDSTLLEDGFGWKAVAIGYGCGFMFGVIMGYVVF KTRRPAWFLKMVEDQWSLNASRTKKNASRNGARRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G025300 [exp]	0	1
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	3.00	0.9446
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	8.00	0.9417	WRKY40.2
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	9.48	0.9358
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	10.19	0.9332
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	11.53	0.9225	ERF11,Pt-EREBP1.3
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	13.60	0.9230
AT5G04010			F-box family protein (.1)		Potri.006G044801 [exp]	13.78	0.9215
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014332 [exp]	15.29	0.8918
AT4G21865			unknown protein		Potri.008G172000 [exp]	17.66	0.9224
AT5G66580			unknown protein		Potri.004G149800 [exp]	18.73	0.8172

Compare expression of checked genes

Potri.012G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.