Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 239 / 6e-69 AtRLP12 receptor like protein 12 (.1) AT3G28890 227 / 2e-65 AtRLP43 receptor like protein 43 (.1.2) AT4G13810 223 / 1e-63 AtRLP47 receptor like protein 47 (.1.2) AT3G25020 221 / 4e-62 AtRLP42 receptor like protein 42 (.1) AT2G33060 216 / 6e-61 AtRLP27 receptor like protein 27 (.1) AT4G13920 215 / 6e-60 AtRLP50 receptor like protein 50 (.1) AT2G25440 209 / 3e-59 AtRLP20 receptor like protein 20 (.1) AT3G11080 210 / 3e-58 AtRLP35 receptor like protein 35 (.1) AT3G25010 209 / 4e-58 AtRLP41 receptor like protein 41 (.1) AT3G05360 208 / 5e-58 AtRLP30 receptor like protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G025300 [exp] 880 / 0 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G026600 [exp] 880 / 0 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G009400 [exp] 876 / 0 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.012G019850 [exp] 765 / 0 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.012G020600 [exp] 597 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G030125 [exp] 578 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G008300 [exp] 573 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G031251 [exp] 558 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1) Potri.012G007932 [exp] 556 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 247 / 1e-71 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 242 / 1e-69 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 245 / 2e-69 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10003389 [exp] 229 / 1e-64 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002214 [exp] 220 / 4e-64 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10026415 [exp] 226 / 4e-63 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10011064 [exp] 223 / 2e-62 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10042239 [exp] 212 / 1e-58 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10014910 [exp] 206 / 5e-57 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10016402 [exp] 204 / 6e-57 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G025700.2 pacid=42782495 polypeptide=Potri.012G025700.2.p locus=Potri.012G025700 ID=Potri.012G025700.2.v4.1 annot-version=v4.1 ATGCTTCACGGAACCCTGCATTCCAATAATTCTCTCTTCTCTCTTCATCGTCTTCAAAAGCTCGTCCTCTCTTACAACGATTTCAACTTCTCCAATATCT CTTCTCAATTTGGCCAGTTTTCCAATTTGATGCATCTTAACCTAACTCATTCAAATTTTGGCCAAGTTCCATCGGAAATCTCTCATCTCTCCAAATTGGT TTCACTTGATATCTCAAACAAACATCTAAGTCTAGAAACAATCTCTTTTGACAATATTGTTCAAAACCTAACCAAGCTAAGAGTACTCTATTTGGATTAT ATAGATATGTCTTTGGTTGCACCTAATTCCTTGACAAATTTGTCCTCTTCCTTGACATTGCTTTCACTTGTGGGTTGTGGATTGCAAGGGGAGTTCCCAC GTAACATCTTTCTTCTACCAAACCTAGACTCCCTCATTTTGGCAGACAACGAAGGCCTCACTGGCTCTTTTCCTTCCTCCAATGTGAGTAATGTCCTCTG GCAGCTGGTCCTTTCTGATACAAGAATTTCAGTACATTTAGAAAATGACTTCATCAGTAAGCTCAAGTCGTTAGAATATATGTGGCTTCGCAATTGTGAC ATTCGAAGTGAAATCCCATCATCATTTGAAAACCTTTCAAATCTAGAGAGTCTATATTTATTTAGTAACTTATTCAATGGGACAATACCATCCTTTTTGT TTGCTCTTCCTTCTTTAGGTTATTTGGACCTTCATAACAATCATTTCATAGGCCATATAAGTGAATTCCAACATAATTCGTTGGAATACCTTGATCTGAA CCTGTCCAACAACAGTCTGAGTGGTTCTATTCCACAATGTTTGAGCAACTTCAGCAACACTCTCTCAATTTTGCATCTAGGCATGAACAATCTTCAAGGC ACTATCTCTTTAGCATTCTCAGAGGGGAATAGCTTGGGATATCTCAGCCTCAATGACAACGAATTGGAAGGGGAAATACCATCATCTATCATCAATTGCA CAATGTTGGAAGTTCTTGATCTTGGCAACAATAAGATTAAGGATACATTCCCCCATTTCCTAGAAAGGCTTCCAAAGTTGCAGGTTCTTGTTCTAAAATC CAATAAACTCCAGGGTTTTGTGAAGGATCCGACTACTTATAATTCATTCTCTAAATTACAGATTTTTTACATCTCCAGCAATAATTTGAGTGGACCATTA CCAACAGGGTTTTTCAATAGTCTTGAAGCAATGATGACCTCGCATCAAAATATGATTTACATGACATCAAACAATTACTATGGTTTTGCCGATATTTATG CCTATTCCGTAGAAATGACGTGGAAAGGATTGGAATTTGAGTTTGTAAAAATTCAAAGTATCCTCAGAGTACTTGATTTGTCAAGTAATAGTTTCACTGG TGAGATTCCAAAATTGATCGGAAAGCTTAAAGGACTCCAACAACTTAACCTCTCTCACAATTACTTTACTGGTCATATCCAATCATCATTGGGAATTTTG ACCAATCTAGAATCATTAGATCTATCTTCAAATTTGTTTACTGGAAGGATTCCTATACAGTTGGTAGATCTAACATTTCTCCAAGTCTTAGACCTTTCAC ATAACCGGCTTGAAGGACCCATACACAAAGGAAAGCAGTTCAACACGTTTGATCATCGCTCATTCGAAGGAAACTCTGGTTTGTGTGGATTTCCAATGCC AGAAGAATGTAGCAATGGCGAGGCACCACCATTACCACCATCAATGATTCAACATTGCTTGAAGATGGGTTTGGATGGAAAGCTGTGGCAATTGGGTATG GATGTGGGTTTATGTTTGGGGTCATAA
AA sequence Show only first row Show all	>Potri.012G025700.2 pacid=42782495 polypeptide=Potri.012G025700.2.p locus=Potri.012G025700 ID=Potri.012G025700.2.v4.1 annot-version=v4.1 MLHGTLHSNNSLFSLHRLQKLVLSYNDFNFSNISSQFGQFSNLMHLNLTHSNFGQVPSEISHLSKLVSLDISNKHLSLETISFDNIVQNLTKLRVLYLDY IDMSLVAPNSLTNLSSSLTLLSLVGCGLQGEFPRNIFLLPNLDSLILADNEGLTGSFPSSNVSNVLWQLVLSDTRISVHLENDFISKLKSLEYMWLRNCD IRSEIPSSFENLSNLESLYLFSNLFNGTIPSFLFALPSLGYLDLHNNHFIGHISEFQHNSLEYLDLNLSNNSLSGSIPQCLSNFSNTLSILHLGMNNLQG TISLAFSEGNSLGYLSLNDNELEGEIPSSIINCTMLEVLDLGNNKIKDTFPHFLERLPKLQVLVLKSNKLQGFVKDPTTYNSFSKLQIFYISSNNLSGPL PTGFFNSLEAMMTSHQNMIYMTSNNYYGFADIYAYSVEMTWKGLEFEFVKIQSILRVLDLSSNSFTGEIPKLIGKLKGLQQLNLSHNYFTGHIQSSLGIL TNLESLDLSSNLFTGRIPIQLVDLTFLQVLDLSHNRLEGPIHKGKQFNTFDHRSFEGNSGLCGFPMPEECSNGEAPPLPPSMIQHCLKMGLDGKLWQLGM DVGLCLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G025700 [exp]	0	1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.010G049600 [exp]	3.31	0.8679
AT5G36930			Disease resistance protein (TI...		Potri.004G230000 [exp]	4.00	0.8772
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	12.84	0.8790	Pt-SYP121.1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	13.49	0.8839
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	19.79	0.8823
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	25.49	0.7953
AT4G12731			unknown protein		Potri.001G226750 [exp]	25.74	0.8608
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	26.22	0.8709
AT5G10695			unknown protein		Potri.010G251000 [exp]	26.72	0.8463
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	29.12	0.8610

Compare expression of checked genes

Potri.012G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.