Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 383 / 3e-118 AtRLP6 receptor like protein 6 (.1) AT1G71400 353 / 1e-108 AtRLP12 receptor like protein 12 (.1) AT2G33060 350 / 1e-107 AtRLP27 receptor like protein 27 (.1) AT3G05650 347 / 7e-106 AtRLP32 receptor like protein 32 (.1) AT4G13920 344 / 8e-105 AtRLP50 receptor like protein 50 (.1) AT1G47890 345 / 4e-104 AtRLP7 receptor like protein 7 (.1) AT3G25020 334 / 4e-101 AtRLP42 receptor like protein 42 (.1) AT3G25010 330 / 2e-99 AtRLP41 receptor like protein 41 (.1) AT3G05360 320 / 6e-97 AtRLP30 receptor like protein 30 (.1) AT3G05370 322 / 8e-97 AtRLP31 receptor like protein 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055000 [exp] 1266 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G008300 [exp] 1212 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 1208 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G027400 [exp] 1198 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G008911 [exp] 1093 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G028101 [exp] 1075 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G025400 [exp] 1068 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G029000 [exp] 1063 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G014625 [exp] 1061 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 377 / 3e-117 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 376 / 7e-117 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 362 / 2e-111 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10003389 [exp] 327 / 6e-97 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10011039 [exp] 320 / 2e-92 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 309 / 4e-92 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10026415 [exp] 311 / 3e-91 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 307 / 6e-90 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10042239 [exp] 301 / 2e-87 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011064 [exp] 295 / 8e-86 AT1G45616 366 / 2e-111 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G026000.1 pacid=42784386 polypeptide=Potri.012G026000.1.p locus=Potri.012G026000 ID=Potri.012G026000.1.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACCGTCGCTCTCTTTCATTCTGTTTCTCTTCCATTTCCTTTCAACAATATCATCATCTCATTTCTGTGCTCCTGATCAAAGTCTTT CTTTGCTCCAATTCAAAGAATCATTTTCCATTAGTAGTTCTGCTTCGGAGCTTTGCCACCATCCCAAGACAGAGTCATGGAAAGAGGGTACAGACTGCTG CTTGTGGGATGGGGTTACTTGTGACCTGGAAACCGGGCATGTCACTGGACTGGACCTCTCTTGCAGCATGCTTTATGGCACCCTCCATTCCAATAGCACC CTCTTCTCTCTCCATCATCTTCAAAAGCTTGACCTTTCTGACAATGATTTCAATAGCTCCCATATTTCTTCTCGATTTGGCCAGTTCTCCAATCTGACAC TTCTTAACCTAAATTACTTAGACTTTGCAGGACAAGTTCCGTCGGAAATCTCTCATCTCTCCAAATTGGTTTCCCTTGATCTCTCTAGAAACTACGATCT AAGTCTACAACCAATTTGTTTTGACAAGCTTGTTCAAAACCTAACCAAGCTTAGACAACTCGATTTGGGCAGTGTAAATATGTCTTTGGTTGAACCTAAT TCCTTGACGAATTTGTCCTCTTCTTTGTCATCTCTTTCCCTTGGGGATTGTGGATTGCAGGGGAAATTCCCAGGTAACATCTTTCTCCTCCCAAACCTTG AATCACTTGATCTGATATTCAATGACGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAACGTCCTCTCGCGGTTGGATCTTTCTAATACAAGAAT TTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTTATTAGAATATATGTCTCTTAGTGAAAGTAACATTATAAGGTCAGATCTAGCCCTGCTT GGTAATCTCACACGGCTTACCTATTTAGACCTCTCAGGTAACAATTTTGGCGGTGAGATCCCATCATCACTTGGAAACCTTGTACAGCTTCGTTCCTTGT ATCTCTATTCCAATAAATTTGTGGGTCAAGTTCCAGATTCTTGGGGTAGTCTAATCCATCTTTTAGATTTAGATTTATCTGATAATCCGCTAGTAGGCCC TGTCCATTCTCAAATAAATACCCTTTCAAATCTAAAGAGTCTAGCTTTATCTGATAACTTGTTCAATGTAACAATACCATCCTTTTTATATGCTCTTCCT TCTTTATATTATCTTGACCTTCATAACAATAATCTCATAGGTAATATAAGTGAATTCCAACACAATTCATTGACTTACCTTGATTTGAGCAATAACCACT TGCATGGTACAATCCCAAGTTCGATTTTTAAACAAGAGAACTTGGAAGCCCTCATTCTTGCGTCCAATAGTAAATTGACAGGTGAGATTTCTTCTTCTAT TTGCAAGCTGAGATTCCTTCAAGTCTTGGACTTGTCCAACAACAGCTTGAGTGGTTCTACGCCACCATGTTTGGGGAACTTCAGCAACATCCTCTCAGTA TTGCATCTAGGCATGAACAATCTTCAAGGCGCTATCCCTTCAACATTTTCAAAGGATAATAGCTTGGAATATCTCAACCTCAATGGAAATGAATTACAAG GGAAAATATCATCGTCTATCATCAACTGCACAATGTTGGAAGTTCTTGATCTTGGCAACAATAAGATTGAGGATACATTTCCCTATTTTCTAGAAACGCT TCCACATCTGCAAATTCTAATTCTAAAATCCAATAAACTCCAAGGTTTTGTGAAGGGTCGGACTACATATAATTCCTTCTCTGAATTACAGATTTTTGAC ATCTCTGACAATGATTTTAGGGGGCCATTGCCAACAGGGTTTTTAAATTGTCTTGAAGCAATGATGGCCTCAGATCAAAACATGATTTACATGAATGCAA CAAATTACTCTCGTTATGTCTATTCCATAGAAATGACATGGAAAGGTGTGGAAATTGAGTTTCCGAAGATACAAAGTACCATCAGAGTACTCGATTTGTC AAATAACAATTTCACCGAAGAGATTCCAAAGGTGATCGGAAAGCTTAAAGCACTCCAACAACTCAATCTCTCTCATAATTCCCTTGCAGGTTATATCCAA TCATCATTAGGAATCTTGACCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGAAGGATTCCAATGCAACTGGGGGTTCTTACATTTCTTG CAATCTTAAACCTTTCACATAACCAACTCGAGGGACCCATACCAAGTGGAAAGCAATTCAACACCTTTAATGCAAGCTCATTTGAAGGAAACTTGGGTTT ATGTGGATTTCAAGTACTGAAAGAATGCTACGGTGATGAGGCACCATCATTGCCGCCATCAAGCTTTGATGAAGGAGATGATTCAACATTGGTTGGAGAT GGATTTGGATGGAAAGCTGTGACAATTGGGTATGGATGCGGGTTTGTGTTTGGAGTTGCATCGGGATACGTTGTGTTTAGAACAAAAAAACCTTCATGGT TTTTTAGGATGGTTGAAGATAAATGGAATCTCAAGAGCAAAAAAACAAAGAAGAATGTTGGCAGATATGGTGCTAGAGGAAACTAA
AA sequence Show only first row Show all	>Potri.012G026000.1 pacid=42784386 polypeptide=Potri.012G026000.1.p locus=Potri.012G026000 ID=Potri.012G026000.1.v4.1 annot-version=v4.1 MGFSPPSLSFILFLFHFLSTISSSHFCAPDQSLSLLQFKESFSISSSASELCHHPKTESWKEGTDCCLWDGVTCDLETGHVTGLDLSCSMLYGTLHSNST LFSLHHLQKLDLSDNDFNSSHISSRFGQFSNLTLLNLNYLDFAGQVPSEISHLSKLVSLDLSRNYDLSLQPICFDKLVQNLTKLRQLDLGSVNMSLVEPN SLTNLSSSLSSLSLGDCGLQGKFPGNIFLLPNLESLDLIFNDGLTGSFPSSNLSNVLSRLDLSNTRISVYLENDLISNLKLLEYMSLSESNIIRSDLALL GNLTRLTYLDLSGNNFGGEIPSSLGNLVQLRSLYLYSNKFVGQVPDSWGSLIHLLDLDLSDNPLVGPVHSQINTLSNLKSLALSDNLFNVTIPSFLYALP SLYYLDLHNNNLIGNISEFQHNSLTYLDLSNNHLHGTIPSSIFKQENLEALILASNSKLTGEISSSICKLRFLQVLDLSNNSLSGSTPPCLGNFSNILSV LHLGMNNLQGAIPSTFSKDNSLEYLNLNGNELQGKISSSIINCTMLEVLDLGNNKIEDTFPYFLETLPHLQILILKSNKLQGFVKGRTTYNSFSELQIFD ISDNDFRGPLPTGFLNCLEAMMASDQNMIYMNATNYSRYVYSIEMTWKGVEIEFPKIQSTIRVLDLSNNNFTEEIPKVIGKLKALQQLNLSHNSLAGYIQ SSLGILTNLESLDLSSNLLTGRIPMQLGVLTFLAILNLSHNQLEGPIPSGKQFNTFNASSFEGNLGLCGFQVLKECYGDEAPSLPPSSFDEGDDSTLVGD GFGWKAVTIGYGCGFVFGVASGYVVFRTKKPSWFFRMVEDKWNLKSKKTKKNVGRYGARGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G026000 [exp]	0	1
AT1G61280			Phosphatidylinositol N-acetylg...		Potri.014G043400 [exp]	2.00	0.7872
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G006200 [exp]	19.36	0.6981
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005800 [exp]	19.89	0.6714
AT5G41380			CCT motif family protein (.1)		Potri.003G130500 [exp]	22.97	0.7108
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	23.30	0.7687
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	24.49	0.7411
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	30.09	0.7366
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G100500 [exp]	30.26	0.7438
					Potri.013G042750 [exp]	31.85	0.6689
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	36.11	0.7298

Compare expression of checked genes

Potri.012G026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.