Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33060 345 / 4e-106 AtRLP27 receptor like protein 27 (.1) AT3G28890 338 / 1e-104 AtRLP43 receptor like protein 43 (.1.2) AT4G13810 333 / 3e-102 AtRLP47 receptor like protein 47 (.1.2) AT3G05660 330 / 4e-100 AtRLP33 receptor like protein 33 (.1) AT3G05650 314 / 6e-94 AtRLP32 receptor like protein 32 (.1) AT2G33050 305 / 2e-91 AtRLP26 receptor like protein 26 (.1) AT5G40170 301 / 1e-89 AtRLP54 receptor like protein 54 (.1) AT1G71400 301 / 3e-89 AtRLP12 receptor like protein 12 (.1) AT1G71390 296 / 4e-88 AtRLP11 receptor like protein 11 (.1) AT2G33020 293 / 2e-86 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G025300 [exp] 1432 / 0 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G009400 [exp] 1379 / 0 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.012G019850 [exp] 1240 / 0 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.012G020600 [exp] 978 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G008300 [exp] 947 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 944 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G026000 [exp] 944 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G025700 [exp] 885 / 0 AT1G71400 239 / 1e-68 receptor like protein 12 (.1) Potri.012G027400 [exp] 857 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 350 / 2e-107 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 343 / 7e-105 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 315 / 3e-94 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10004310 [exp] 300 / 5e-89 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 285 / 8e-84 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 287 / 6e-83 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10011039 [exp] 288 / 1e-81 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10003389 [exp] 283 / 2e-81 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 279 / 7e-80 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10002214 [exp] 252 / 2e-74 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G026600.2 pacid=42783793 polypeptide=Potri.012G026600.2.p locus=Potri.012G026600 ID=Potri.012G026600.2.v4.1 annot-version=v4.1 ATGAAGTATTATTCATTATCCCTCGCTCAGTTTCTCTGTTCCATTTTGTTTCTCTTGTATTTTCTGACAACAATTTCATCATCATTCTCCTCAAATCTCT CCTCTTCTACTCATTTATGTGCTCATCACCAAGCTCTTCCTCTGCTTCAATTCACACTATCCTTTTCCATTCAGAGTTCTCCTTTTTGGTTTGCTAGAAA TTATCAATATGATCAATATCCCAAGACAGAGTCATGGAAAGAGGGTACAGACTGCTGCTTGTGGGATGGGGTCACTTGTGACCTGGAAACCGGGCAAGTG ACTGAACTGGACCTCTCTTTCAGCATGCTTTACGGAACCCTGCATTCCAATAATTCTCTCTTCTCTCTTCATCATCTTCAAAAGCTCGTCCTCTCTTACA ATGATTTCAACTTCTCCAAAATTTCTTCTCAATTTGGTCAGTTTTCCAATTTGATGCATCTTAACCTAACTCATTCAAATTTTGCAGGCCAAGTTCCATC AGAAATCTCTCATCTCTCCAAATTGGTTTTCCTTGATATCTCAAACAAACATCTAAGTCTAGAAACAATCTCTTTTGACAAGATTGTCCAAAACCTAACC AAGCTCAGAGTACTCTACTTGGATTATATAGATATGTCTTTGGTTGCACCTAATTCCTTAACGAATTTGTCCTCTTCTTTGACATTGCTTTCACTTGTGG ATTGTGGATTGCAAGGGGAGTTCCCAAGTAACATCTTTCTTCTACCAAACCTTGACTCCCTCATTTTGGCAGACAACGAAGGCCTCACTGGCTCTTTTCC TTCCTCCAATGTGAGTAATGTCCTCTGGCAGTTGGTCCTTTCTGATACAAGAATTTCAGTTCATTTAGAAAATGACTTCATCAGTAAGCTCAAGTCGTTA GAATACATTTGGCTTCGCAATTGTGACATTCGAACGACAAATGTAGCTCTGCTTGGTAATCTCACACAGCTTAGAATGTTAGACCTCTCACATAGTAATT TGAGCGGTGAAATCCCATCATCATTTGAAAACCTTTCAAATCTAGAGAGTCTATATTTATTTAGCAACTTCTTCAATGGGACAATACCATCCTTTTTGTT TGCTCTTCCTTCTTTAGGTTATTTGGACCTTCATAACAATCATTTCATAGGCCATATAAGTGAATTCCAACATAATTCGTTGGAATACCTTGATCTGAGC AATAATCACTTGCATGGTCCTGTCCCAAGCTCAATTTTCAAACAAGAGTATTTGAAAGTCCTTATTCTTGCGTCCAACAATAAATTGTCAGGTGAGATTT CTTATTCTATATGCAAGCTGAAATACCTTGAAATCCTTGACCTGTCCAACAACAGTCTGAGTGGTTCTATTCCACAATGTTTGAGCAACTTCAGCAACAC TCTCTCAATTTTGCATTTAGGCATGAACAATCTTCAAGGCACTATCTCTTTAGCATTCTCAGAGGGGAATAGCTTGGGATATCTCATCCTCAATGACAAT GAATTGGAAGGGGAAATACCATCATCTATCATCAATTGCACAATGTTGGAAGTTCTTGATCTTGGCAACAATAAGATTAAGGATACATTCCCCCATTTCC TAGAAAGGCTTCCAAAGTTGCAGGTTCTTGTTCTAAAATCCAATAAACTCCAGGGTTTTGTGAAGGATCCGACTACTTATAATTCATTCTCTAAATTACA TATTTTTGACATCTCCAGCAATAATTTGAGTGGACCATTACCAACAGGGTTTTTGAATAGTCTTGAAGCAATGATGGCCTCGGATCAAAATAGGATTTAC ATGACATCAAACAATTACTATGGCTTTGCCGATATTTATGCCTATTCCGTAGAAATGACGTGGAAAGGATCGGAATTTGAGTTTGCAAAAGTTCAAGGTA TCCTCAGAGTACTTGATTTGTCAAGTAATAGTTTCACCGGTGAGATTCCAAAATTGATCGGAAAGCTTAAAGGACTCCAACAACTTAACCTCTCTCACAA TTACCTTACTGGTCATATCCAATCATCATTAAGAATTTTGAACAATCTAGAATCATTAGATCTATCTTCAAATTTGCTCACCGGAAGGATTCCTATACAG TTGGTAGATCTAACATTTCTCCAAGTCTTAGACCTTTCACATAACCGGCTTGAAGGACCCATACCCAAAGGAAAGCAGTTCAACACGTTTGATCATCGCT CATTCGAAGGAAACTCTGGTTTGTGTGGATTTCCAATGCCAGAAGAATGTAGCAATGGCGAGGCACCACCATTACCACCATCAAACTTTATTGCAGGAGA TGATTCAACATTGCTTGAAGATGGGTTTGGATGGAAAGCTGTGGCAATTGGGTATGGATGTGGGTTTATGTTTGGAGTCATAATGGGATATGTTGTGTTT AAAACAAGAAGACCTGCATGGTTTCTGAAAATGGTTGAAGATCAATGGAGTCTTAATGCAAGCAGAACAAAGAAGAATGCTAGTAGAAATGGTGCAAGAA GAAAATAA
AA sequence Show only first row Show all	>Potri.012G026600.2 pacid=42783793 polypeptide=Potri.012G026600.2.p locus=Potri.012G026600 ID=Potri.012G026600.2.v4.1 annot-version=v4.1 MKYYSLSLAQFLCSILFLLYFLTTISSSFSSNLSSSTHLCAHHQALPLLQFTLSFSIQSSPFWFARNYQYDQYPKTESWKEGTDCCLWDGVTCDLETGQV TELDLSFSMLYGTLHSNNSLFSLHHLQKLVLSYNDFNFSKISSQFGQFSNLMHLNLTHSNFAGQVPSEISHLSKLVFLDISNKHLSLETISFDKIVQNLT KLRVLYLDYIDMSLVAPNSLTNLSSSLTLLSLVDCGLQGEFPSNIFLLPNLDSLILADNEGLTGSFPSSNVSNVLWQLVLSDTRISVHLENDFISKLKSL EYIWLRNCDIRTTNVALLGNLTQLRMLDLSHSNLSGEIPSSFENLSNLESLYLFSNFFNGTIPSFLFALPSLGYLDLHNNHFIGHISEFQHNSLEYLDLS NNHLHGPVPSSIFKQEYLKVLILASNNKLSGEISYSICKLKYLEILDLSNNSLSGSIPQCLSNFSNTLSILHLGMNNLQGTISLAFSEGNSLGYLILNDN ELEGEIPSSIINCTMLEVLDLGNNKIKDTFPHFLERLPKLQVLVLKSNKLQGFVKDPTTYNSFSKLHIFDISSNNLSGPLPTGFLNSLEAMMASDQNRIY MTSNNYYGFADIYAYSVEMTWKGSEFEFAKVQGILRVLDLSSNSFTGEIPKLIGKLKGLQQLNLSHNYLTGHIQSSLRILNNLESLDLSSNLLTGRIPIQ LVDLTFLQVLDLSHNRLEGPIPKGKQFNTFDHRSFEGNSGLCGFPMPEECSNGEAPPLPPSNFIAGDDSTLLEDGFGWKAVAIGYGCGFMFGVIMGYVVF KTRRPAWFLKMVEDQWSLNASRTKKNASRNGARRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G026600 [exp]	0	1
AT4G13810		AtRLP47	receptor like protein 47 (.1.2...		Potri.012G019850 [exp]	1.00	0.8307
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	3.46	0.7704
					Potri.001G142150 [exp]	7.41	0.7524
AT3G19240			Vacuolar import/degradation, V...		Potri.009G102000 [exp]	10.19	0.7273
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	12.60	0.7554
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	14.07	0.7412
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	19.74	0.7303
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	19.79	0.7457
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	24.59	0.7291
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	25.09	0.7237

Compare expression of checked genes

Potri.012G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.