Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 155 / 3e-40 AtRLP35 receptor like protein 35 (.1) AT3G28890 143 / 3e-36 AtRLP43 receptor like protein 43 (.1.2) AT1G45616 139 / 1e-34 AtRLP6 receptor like protein 6 (.1) AT3G11010 137 / 5e-34 AtRLP34 receptor like protein 34 (.1) AT1G47890 135 / 2e-33 AtRLP7 receptor like protein 7 (.1) AT5G27060 130 / 1e-31 AtRLP53 receptor like protein 53 (.1) AT2G15080 128 / 3e-31 AtRLP19 receptor like protein 19 (.1.2) AT4G13920 127 / 7e-31 AtRLP50 receptor like protein 50 (.1) AT1G71400 120 / 1e-28 AtRLP12 receptor like protein 12 (.1) AT3G25020 120 / 2e-28 AtRLP42 receptor like protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027600 [exp] 577 / 0 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G028101 [exp] 570 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.011G055200 [exp] 555 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.012G025100 [exp] 550 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.012G008666 [exp] 524 / 2e-179 AT1G45616 260 / 5e-74 receptor like protein 6 (.1) Potri.012G014625 [exp] 523 / 6e-177 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G029000 [exp] 520 / 1e-175 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.011G054500 [exp] 515 / 7e-174 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G027400 [exp] 501 / 1e-168 AT3G05660 347 / 3e-105 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 125 / 4e-30 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 121 / 9e-29 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 120 / 2e-28 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10028053 [exp] 116 / 6e-28 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10006825 [exp] 117 / 2e-27 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10006824 [exp] 111 / 8e-26 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026938 [exp] 111 / 2e-25 AT5G20480 735 / 0.0 EF-TU receptor (.1) Lus10003387 [exp] 108 / 1e-24 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016342 [exp] 108 / 1e-24 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10014910 [exp] 108 / 1e-24 AT1G71400 357 / 7e-110 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G027250.1 pacid=42783041 polypeptide=Potri.012G027250.1.p locus=Potri.012G027250 ID=Potri.012G027250.1.v4.1 annot-version=v4.1 ATGCCTTTCTTCACTTCTCATCTTAAATTCCCAGTTAATTATACTTTGAATCCTGTAAGGCCAGCCAACATGGGGTTTTCACTACCGTGCCTCTCTCAAT CTCTCTCTTTCATTCTGTTTCTCTTCCATTTCCACTCAACAATTTCATCTCCACTCTCCTCAAATTACTCCTCCTCCTCCTCTTCTCATTTGTGTGCTCA TCGCCAATCTCTTTCTCTCCTTCAATTCAAACAATCCTTCTCCATTCAGAGTTCTCCTTTTTGGTTTGCTAGAAACTATCAATATGATCAATATCCCAAG ACAGAGTCATGGAAAGAGGGCACAGACTGCTGCTTGTGGGATGGAGTCACTTGTGACCTGAAAACCGGGCACGTCAGTGGACTGGACCTCTCCTGCAGCA TGCTTTACGGCACCCTCCATCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAAAAACTCGACCTCTCTTTGAATGATTTCAACACCTCCCATATTTC TTCTCGATTTGGCCAGTTCTCCAGTCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCAGAAATCTCTCACCTCTCCAAAATG GTTTCTCTTGATCTCTCTAGGAACGACTATGTGAGTGTAGAACCAATTTCTTTTGACAAGCTTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTA GAGAACTCGATTTGAGTTGGGTAAACATGTCACTAGTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCGATGACTGTGG ATTGCAAGGAAAATTCCCATCCTCAATGGGGAAATTTAAGCACCTGCAGTACTTGGGTCTTGGATGGAACAATCTTACTGGTCCAATTCCATATGGTTTT GAGCAACTCAGTGAGCTGGTTTCCCTTCATCTCTCTGGAAACTTCTATCTAAGTCTAGAACCAATTTCTTTTGACAAGATTGTTCAAAACCTAACCAAGC TAAGATATCTCGCTTTGGGTTATTTAAATATGTCTGTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTGTCATCTCTTTCCCTTTGGGGTTG TGGATTGCAGGGGAAGTTCCCGGGTAACATCTTTCTCCTCCCAAACCTTGAATCACTCTATTTGTCATACAACGAAGGCCTCACTGGCTCTTTTCCTTCG TCCAATTTGAGTAATGTCCTTTATGGGTTGGGTCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATATAAAGTCATTAGAAT ATATGTATCTTAGTAATAGTAGTATTATAAGGTCAGATTTATCCTTGCTCGGTAATCTCACACATCTCCTATCTTTAGACCTTTCAAGTAATAATCTAAA CGGTCAGATCCCATCATCACTTGGAAACCTTGTACACCTCTGTTACTTGAATCTCGATTCCAATAAATTTATGGGTCAAGTTCCAGATTTTTTAGGTAGC CCAGTCAATCTTTCAGAATTAGATTTATCCAATAATCAACTAGTAACCCTTTCCATTCTCGATTAA
AA sequence Show only first row Show all	>Potri.012G027250.1 pacid=42783041 polypeptide=Potri.012G027250.1.p locus=Potri.012G027250 ID=Potri.012G027250.1.v4.1 annot-version=v4.1 MPFFTSHLKFPVNYTLNPVRPANMGFSLPCLSQSLSFILFLFHFHSTISSPLSSNYSSSSSSHLCAHRQSLSLLQFKQSFSIQSSPFWFARNYQYDQYPK TESWKEGTDCCLWDGVTCDLKTGHVSGLDLSCSMLYGTLHPNNSLFSLHHLQKLDLSLNDFNTSHISSRFGQFSSLTHLNLSGSDLAGQVPSEISHLSKM VSLDLSRNDYVSVEPISFDKLSFDKLVRNLTKLRELDLSWVNMSLVVPDSLMNLSSSLSSLKLDDCGLQGKFPSSMGKFKHLQYLGLGWNNLTGPIPYGF EQLSELVSLHLSGNFYLSLEPISFDKIVQNLTKLRYLALGYLNMSVVAPNSLTNLSSSLSSLSLWGCGLQGKFPGNIFLLPNLESLYLSYNEGLTGSFPS SNLSNVLYGLGLSNTRISVYLENDLISNIKSLEYMYLSNSSIIRSDLSLLGNLTHLLSLDLSSNNLNGQIPSSLGNLVHLCYLNLDSNKFMGQVPDFLGS PVNLSELDLSNNQLVTLSILD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G027250 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076600 [exp]	8.12	0.8927	Pt-CYP89.2
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G223600 [exp]	10.77	0.9227	PT1.5,PtrPHT1-7
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	11.61	0.9325
					Potri.004G104600 [exp]	18.76	0.9050
					Potri.017G111000 [exp]	23.36	0.9173
AT5G24660		LSU2	response to low sulfur 2 (.1)		Potri.015G000500 [exp]	23.66	0.8874
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108800 [exp]	24.37	0.9143
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	25.74	0.8848
					Potri.017G111150 [exp]	26.73	0.9192
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466400 [exp]	28.86	0.8611

Compare expression of checked genes

Potri.012G027250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.