Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 394 / 2e-121 AtRLP12 receptor like protein 12 (.1) AT1G45616 391 / 8e-119 AtRLP6 receptor like protein 6 (.1) AT3G28890 377 / 1e-116 AtRLP43 receptor like protein 43 (.1.2) AT3G05660 382 / 2e-116 AtRLP33 receptor like protein 33 (.1) AT2G33060 375 / 2e-114 AtRLP27 receptor like protein 27 (.1) AT5G27060 374 / 1e-112 AtRLP53 receptor like protein 53 (.1) AT5G25910 366 / 2e-111 AtRLP52 receptor like protein 52 (.1) AT3G11010 366 / 2e-110 AtRLP34 receptor like protein 34 (.1) AT4G13920 362 / 8e-109 AtRLP50 receptor like protein 50 (.1) AT1G47890 364 / 2e-108 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G025400 [exp] 1303 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G009200 [exp] 1271 / 0 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.012G028101 [exp] 1116 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G010445 [exp] 1104 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.011G055000 [exp] 1032 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G027400 [exp] 1006 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G028500 [exp] 999 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G028366 [exp] 978 / 0 AT1G45616 316 / 5e-93 receptor like protein 6 (.1) Potri.012G008911 [exp] 972 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 476 / 7e-150 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 468 / 2e-146 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 467 / 5e-146 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 366 / 6e-109 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10011039 [exp] 370 / 4e-107 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 346 / 1e-103 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10006825 [exp] 347 / 3e-102 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10011064 [exp] 345 / 2e-101 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10032335 [exp] 331 / 8e-98 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10004313 [exp] 323 / 1e-95 AT2G33060 335 / 5e-103 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G027600.3 pacid=42782877 polypeptide=Potri.012G027600.3.p locus=Potri.012G027600 ID=Potri.012G027600.3.v4.1 annot-version=v4.1 ATGCCTTTCTTCACTTCTCATCTTAAATTCCCAGTTAATTATACTTTGAATCCTGTAAGGCCAGCCAACATGGGGTTTTCACTACCGTGCCTCTCTCAAT CTCTCTCTTTCATTCTGTTTCTCTTCCATTTCCACTCAACAATTTCATCTCCACTCTCCTCAAATTACTCCTCCTCCTCCTCTTCTCATTTGTGTGCTCA TCGCCAATCTCTTTCTCTCCTTCAATTCAAACAATCCTTCTCCATTCAAAATAGTTCAGCTTTTTTGGAGTACTATTGTCCATATCCCTTTCCAAAAACA GAGTCATGGAAAGAGGGTACAGACTGCTGCTTGTGGGATGGGGTCTCTTGTGACCTGAAAACCGGGCATGTCACTGCACTGGACCTCTCTTGCAACATGC TTTACGGCACCCTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAACACCTCGACCTCTCTTTCAATGATTTCAACTCCTCCCATATTTCTTC TCGATTTGGCCAGTTCTCCAATCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCAGAAATCTCTCACCTCTCCAAAATGGTT TCTCTTGGTCTCTCTTGGAACGACTATGTGAGTGTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCCATCTGAGTT GGGTGAACATGTCACTCGTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCGCTCAAACTCAATTCCTGTAGATTGCAAGGAAAACTCCC ATCCTCAATGGGGAAATTTAAGCACCTGCAGTACTTGGATCTTGGAGGGAACGATTTTACTGGTTCAATTCCATATGGTTTTGAGCAACTCAGGGAGTTG GTTTCCCTTGATCTCTCTGGAAACTTCTATCTAAGTCCAGAACCAATTTCTTTTGACAAGCTTGTTCACAACCTAACCAAGCTAAGAGATCTCGCTTTGG ATTATGTAAATATGTCTCTGGTTGCACCTAATTCCTTGACGAATTTGTCCTCTTCTTTGTCATCTCTCTCCCTCAGTCATTGTGGATTGCAGGGAAAATT CCCGGGTAACAACTTTCTCCTCCCAAACCTTGAATCACTCTATTTGTCATACAACGAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTC CTTTCTTGGTTGGATCTTTCTAATACAAGAATTTCAGTTCATTTAGAAAACGACTTAATCAGTAATCTAAAGTCATTAGAATATATGTCTCTTCGTAATT GTAACATTATAAGGTCAGATCTAGCCCTGCTTGGTAATCTCACACAGCTCATCCTTTTAGACCTCTCAAGTAACAATTTTAGCGGTCAGATCCCACCATC ACTTAGTAATCTCACAATTTTAGACCTCTCAAGTAACAATTTTAGCGGTCAGATCCCACCATCACTTAGTAATCTCACAATTTTAGACCTCTCAAGTAAC AATTTTAGCGGTCAGATCCCACCATCACTTAGTAATCTCACACAGCTCACATTTTTAGACCTTTCAAGTAACAATTTTAGCGGTCAGATCCCACAATCAC TTCGTAATCTCACACAGCTCACATTTTTAGACCTTTCAAGTAACAATTTTAGCGGTCAGATCCCACAATCACTTCGTAATCTCACACAGCTCACATTTTT AGACCTTTCAAGTAACAATTTTAGCGGTCAGATCCCACAATCACTTCGTAATCTCACATTTTTAGACCTCTCAAGTAACAATTTTAGCGGTCAGATCCCA TCATCACTTAGAAACCTTATACAGCTCCGTTACTTGTATCTCAGTTCCAATAAATTGATGGGTCAAGTTCCAGATTCTTTAGGTAGCCTAGTCAATCTTT CAGATTTACATTTATCAAATAATCAACTAGTAGGCGCTATCCATTCTCAATTAAATACCCTTTCAAATCTACGATCTCTATATTTATCCAATAACTTGTT CAATGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTACATTATCTTGACCTTCATAACAATAATTTCATAGGTAATATAAGTGAACTCCAACAT GATTCATTGAGATTCCTTGATTTGAGCAATAACCACTTGCGTGGTCCAATCCCAAGTTCGATTTTCAAACAAGAGAACTTGACAACCCTTATTCTTGCAT CCAATAGTAAATTGACAGGTGAGATATCTTCTTCTATTTGCAAGCTGAGATTCCTTCGGGTCCTGGACTTGTCCACCAACAGCTTGAGTGGTTCTATGCC ACAATGTTTGGGGAACTTCAGCAGCATGCTCTCAGTATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAACATTTTCAAAGGATAATAGC TTGGAATATCTCAACCTCAATGGAAATGAAATAGAAGGGAAAATATCATCGTCTATCATCAACTGCACAATGTTGCAAGTTCTTGATCTTGGCAACAATA AGATTGAGGATACATTTCCTTACTTTCTAGAAACGCTTCCAAAGCTCCAAATTCTTGTCCTAAAATCCAATAAACTCCAAGGTTTTGTGAAGGGTCCGGC TGCATATAATTCCTTCTCTAAATTACGGATTCTTGACATCTCTGACAACAATTTTAGTGGGCCATTGCCAACTGGGTATTTCAATAGTCTTGAAGCAATG ATGGCCTCGGATCAAATCATGATTTACATGAGGACAACAAATTACACTGGCTATGTCTATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGAGTTTA CGAAGATCCGAAGTACTATCAGAGTACTTGATTTGTCAAATAACAATTTCACCGGAGAGATTCCAAAAATGATCGGAAAGCTTAAAGCACTCCAACAGCT CAACCTCTCTCATAATTCCCTTACAGGTCAAATCCAATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGA AGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAGCTAGAGGGGCGTATACCAAGTGGAGAGCAGTTCAACA CCTTTGATGCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATCTCAAGTACTAAAAAAATGTTACGGTGATGAGGCACGATCATTACCGCCATCAAG CTTTGATGAAGGAGATGATTCAACATTGTTTGGAGAAGGATTTGGATGGAAAGCTGTGACAGTGGGGTATGGATGCGGGTTTGTGTTTGGAGTTGCAACG GGATACGTTGTGTTTAGAACAAAAAAGCCTTCATGGTTTCTTAGGATGGTTGAAGATATATGGAATCTCAAGAGCAAGAAAACAAAGAAGAATGCTGGCA GATATGATGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G027600.3 pacid=42782877 polypeptide=Potri.012G027600.3.p locus=Potri.012G027600 ID=Potri.012G027600.3.v4.1 annot-version=v4.1 MPFFTSHLKFPVNYTLNPVRPANMGFSLPCLSQSLSFILFLFHFHSTISSPLSSNYSSSSSSHLCAHRQSLSLLQFKQSFSIQNSSAFLEYYCPYPFPKT ESWKEGTDCCLWDGVSCDLKTGHVTALDLSCNMLYGTLLPNNSLFSLHHLQHLDLSFNDFNSSHISSRFGQFSNLTHLNLSGSDLAGQVPSEISHLSKMV SLGLSWNDYVSVEPISFDKLVRNLTKLRELHLSWVNMSLVVPDSLMNLSSSLSSLKLNSCRLQGKLPSSMGKFKHLQYLDLGGNDFTGSIPYGFEQLREL VSLDLSGNFYLSPEPISFDKLVHNLTKLRDLALDYVNMSLVAPNSLTNLSSSLSSLSLSHCGLQGKFPGNNFLLPNLESLYLSYNEGLTGSFPSSNLSNV LSWLDLSNTRISVHLENDLISNLKSLEYMSLRNCNIIRSDLALLGNLTQLILLDLSSNNFSGQIPPSLSNLTILDLSSNNFSGQIPPSLSNLTILDLSSN NFSGQIPPSLSNLTQLTFLDLSSNNFSGQIPQSLRNLTQLTFLDLSSNNFSGQIPQSLRNLTQLTFLDLSSNNFSGQIPQSLRNLTFLDLSSNNFSGQIP SSLRNLIQLRYLYLSSNKLMGQVPDSLGSLVNLSDLHLSNNQLVGAIHSQLNTLSNLRSLYLSNNLFNGTIPSFLFALPSLHYLDLHNNNFIGNISELQH DSLRFLDLSNNHLRGPIPSSIFKQENLTTLILASNSKLTGEISSSICKLRFLRVLDLSTNSLSGSMPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKDNS LEYLNLNGNEIEGKISSSIINCTMLQVLDLGNNKIEDTFPYFLETLPKLQILVLKSNKLQGFVKGPAAYNSFSKLRILDISDNNFSGPLPTGYFNSLEAM MASDQIMIYMRTTNYTGYVYSIEMTWKGVEIEFTKIRSTIRVLDLSNNNFTGEIPKMIGKLKALQQLNLSHNSLTGQIQSSLGNLTNLESLDLSSNLLTG RIPTQLGGLTFLAILNLSHNQLEGRIPSGEQFNTFDASSFEGNLGLCGSQVLKKCYGDEARSLPPSSFDEGDDSTLFGEGFGWKAVTVGYGCGFVFGVAT GYVVFRTKKPSWFLRMVEDIWNLKSKKTKKNAGRYDARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G027600 [exp]	0	1
					Potri.012G014800 [exp]	4.24	0.8581
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	7.41	0.8669
					Potri.001G078000 [exp]	7.54	0.8524
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	8.94	0.8368
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	9.79	0.8316	WRKY51.1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	13.11	0.8496
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	15.16	0.8100
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	26.45	0.8002	AMYVM1.2
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	29.34	0.8250
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	33.82	0.8184

Compare expression of checked genes

Potri.012G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.