Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 400 / 2e-123 AtRLP35 receptor like protein 35 (.1) AT1G45616 397 / 4e-122 AtRLP6 receptor like protein 6 (.1) AT5G27060 390 / 1e-119 AtRLP53 receptor like protein 53 (.1) AT3G05660 386 / 5e-119 AtRLP33 receptor like protein 33 (.1) AT3G11010 386 / 8e-119 AtRLP34 receptor like protein 34 (.1) AT1G47890 378 / 1e-114 AtRLP7 receptor like protein 7 (.1) AT2G15080 372 / 7e-113 AtRLP19 receptor like protein 19 (.1.2) AT3G05650 367 / 8e-112 AtRLP32 receptor like protein 32 (.1) AT3G28890 351 / 2e-107 AtRLP43 receptor like protein 43 (.1.2) AT1G71400 340 / 3e-102 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G010445 [exp] 1475 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G025100 [exp] 1365 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.012G014625 [exp] 1353 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G027400 [exp] 1350 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.011G054500 [exp] 1342 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G029000 [exp] 1337 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.011G055200 [exp] 1336 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.012G008911 [exp] 1329 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G026900 [exp] 1285 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 431 / 6e-134 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 420 / 1e-129 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 413 / 7e-127 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 372 / 4e-112 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10014910 [exp] 364 / 1e-110 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10006825 [exp] 357 / 1e-106 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10011039 [exp] 365 / 2e-106 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 324 / 6e-96 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011064 [exp] 323 / 2e-94 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10024721 [exp] 311 / 3e-91 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G028101.1 pacid=42783455 polypeptide=Potri.012G028101.1.p locus=Potri.012G028101 ID=Potri.012G028101.1.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCTCAATTTCTCTCTTCCATTCTGCTTCTCTTCCATTTCCATTCAACAATTTCATCTCCACTCTCCTCAAATTACT CCTCCTCCTCCTCTTCTCATTCGTGTGCTCATCGCCAATCTCTTTCTCTCCTTCAATTCAAACAATCCTTCTCCATTCAGAGTTCTCCTTTCTGGTTTGC TAGAAACTATCAATATGATCAATATCCCAAGACAGAGTCATGGAAAGAGGGTACAGACTGCTGCTTGTGGGATGGGGTCTCTTGTGACCTGAAAACCGGG CATGTCACTGCACTGGACCTCTCTTGCAGCATGCTTTACGGCACCCTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAACAGCTCGACCTCT CTTTCAATGATTTCAACTCCTCCCATATTTCTTCTCGATTTGGCCAGTTCTCCAATCTCACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGT TCCGTCAGAAATCTCTCACCTCTCCAAAATGGTTTCTCTTGATCTCTCTTGGAACGACTATGTGAGTGTAGAACCAATTTCTTTTGACAAGCTTGTTCGA AACCTAACCAAGCTTAGAGAACTCCATCTGAGTTGGGTAAACATGTCACTAGCTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCGCTCA AACTCCATTACTGTAGATTGCAAGGAAAACTCCCATCCTCAATGGGGAAATTTAAGCACCTGCAGTACTTGGATCTTGGAGGGAACGATTTTACTGGTTC AATTCCATATGATTTTGATCAACTCACCGAGTTGGTTTCCCTTGGTCTCTCTTCCAACAACTATCTAAGTCTAGAACCAATTTCTTTTCGCAAGATTGTT CAAAACCTAACCAAGCTAAGAGAACTGGATTTGAGCTATGTAAATATGTCTTTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTCTCATCTC TTTTCCTTTGGGGTTGTGGATTGCAGGGGAAATTCCCGAGTAACATCTTTCTCCTCCCAAACCTTGAATCAATGGATTTGTCATACAACGAAGGCCTCAC TGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTCTCTCGGTTGGATCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAAT CTAAAGTCATTAGAATATATGTCTCTTCGTAATTGTAACATTATAAGGTCAGATCTAGCCCTGCTTGGTAATCTCACACAGCTCATCGTTTTAGACCTCT CAAGTAACAATTTTAGTGGTCAGATTCCACCATCACTTAGTAATCTCACACAGCTCATAGTTTTAGTCCTTTCAAGTAACAATTTTAGCGGTCATATCCC ACCATCACTTAGTAATCTCACATTTTTAGACCTCTCAAGTAATAATTTTAGCGGTCACATCCCATCATCACTTGGAAACCTTGTACAGCTCCGTTCCTTG GATCTCGGTTCAAATAAATTTATGGGTCAAGTTCCAGATTTTTTGGGTAGCCTAGTTAATATTTTATATTTAGATTTATCCAATAATCAACTAGTAGGCC CCATCCATTCTCAATTAAATACCCTTTCAAATCTACAATATCTATATTTATCCAATAACTTGTTCAATGGAACAATACCATCCTTTTTGTTTGCTCTTCC TTCTTTATATTATCTTGACCTTCATAACAATAATTTCATAGGTAATATAAGTGAACTCCAACATGATTCATTGAGATTCCTTGATTTGAGCAATAACCAC TTGCGTGGTCCAATCCCAAGTTCGATTTTCAAACAAGAGAACTTGACAACCCTTATTCTTGCATCCAATAGTAAATTGACAGGTGAGATATCTTCTTCTA TTTGCAAGCTGAGATTCCTTCGGGTCCTGGACTTGTCCACCAACAGCTTGAGTGGTTCTATGCCACAATGTTTGGGGAACTTCAGCAGCATGCTCTCAGT ATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAACATTTTCAAAGGATAATAGCTTGGAATATCTCAACCTCAATGGAAATGAAATAGAA GGGAAAATATCATCGTCTATCATCAACTGCACAATGTTGCAAGTTCTTGATCTTGGCAACAATAAGATTGAGGATACATTTCCCTACTTTCTAGAAACGC TTCCAAAGCTCCAAATTCTTGTCCTAAAATCCAATAAACTCCAAGGTTTTGTGAAGGGTCCGACTGCATATAATTCCTTCTCTAAATTACGGATTCTTGA CATGTCTGACAACAATTTTAGTGGGCCATTGCCAACTGCGTATTTCAATAGTCTTGAAGCGATGATGGCCTCGGATCAGAACATGATTTATATGAGGGCA ACAAATTACACTGGCTATGTCTATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGAGTTTACGAAGATCCGAAGTACTATCAGAGTACTTGATTTGT CAAATAACAATTTCACCGGAGAGATTCCAAAAATGATCGGAAAGCTTAAAGCACTCCAACAGCTCAACCTCTCTCATAATTCCCTTACAGGTCAAATCCA ATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGAAGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTT GCAATCCTAAACCTTTCACATAACCAACTCGAGGGGCCCATACCAAGTGGAGAGCAATTCAACACCTTTGATGCAAGCTCATTTGAAGGAAACTTGGGTT TATGTGGATCTCAAGTACTAAAAAAATGTTACGGTGATGAGGCACCATCATTACCGCCATCAAGCTTTGATGAAGGAGATGATTCAACATTGTTTGGCGA AGGATTTGGATGGAAAGCTGTGACAGTGGGGTATGGATGCGGGTTTGTGTTTGGAGTTGCAACGGGATACGTTGTGTTTAGAACAAAAAAACCTGCATGG TTTCTTAGGATGGTTGAAGATAAATGGAATCTCAACAACAAAAAAACAAAGAAGAATGCTGGCAGATATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G028101.1 pacid=42783455 polypeptide=Potri.012G028101.1.p locus=Potri.012G028101 ID=Potri.012G028101.1.v4.1 annot-version=v4.1 MGFSPLSLSQFLSSILLLFHFHSTISSPLSSNYSSSSSSHSCAHRQSLSLLQFKQSFSIQSSPFWFARNYQYDQYPKTESWKEGTDCCLWDGVSCDLKTG HVTALDLSCSMLYGTLLPNNSLFSLHHLQQLDLSFNDFNSSHISSRFGQFSNLTHLNLSGSDLAGQVPSEISHLSKMVSLDLSWNDYVSVEPISFDKLVR NLTKLRELHLSWVNMSLAVPDSLMNLSSSLSSLKLHYCRLQGKLPSSMGKFKHLQYLDLGGNDFTGSIPYDFDQLTELVSLGLSSNNYLSLEPISFRKIV QNLTKLRELDLSYVNMSLVAPNSLTNLSSSFSSLFLWGCGLQGKFPSNIFLLPNLESMDLSYNEGLTGSFPSSNLSNVLSRLDLSNTRISVYLENDLISN LKSLEYMSLRNCNIIRSDLALLGNLTQLIVLDLSSNNFSGQIPPSLSNLTQLIVLVLSSNNFSGHIPPSLSNLTFLDLSSNNFSGHIPSSLGNLVQLRSL DLGSNKFMGQVPDFLGSLVNILYLDLSNNQLVGPIHSQLNTLSNLQYLYLSNNLFNGTIPSFLFALPSLYYLDLHNNNFIGNISELQHDSLRFLDLSNNH LRGPIPSSIFKQENLTTLILASNSKLTGEISSSICKLRFLRVLDLSTNSLSGSMPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKDNSLEYLNLNGNEIE GKISSSIINCTMLQVLDLGNNKIEDTFPYFLETLPKLQILVLKSNKLQGFVKGPTAYNSFSKLRILDMSDNNFSGPLPTAYFNSLEAMMASDQNMIYMRA TNYTGYVYSIEMTWKGVEIEFTKIRSTIRVLDLSNNNFTGEIPKMIGKLKALQQLNLSHNSLTGQIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFL AILNLSHNQLEGPIPSGEQFNTFDASSFEGNLGLCGSQVLKKCYGDEAPSLPPSSFDEGDDSTLFGEGFGWKAVTVGYGCGFVFGVATGYVVFRTKKPAW FLRMVEDKWNLNNKKTKKNAGRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	0	1
AT5G24010			Protein kinase superfamily pro...		Potri.005G144200 [exp]	3.16	0.9422
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G055200 [exp]	4.89	0.9168
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	6.00	0.9319
AT5G24010			Protein kinase superfamily pro...		Potri.005G144100 [exp]	6.48	0.9335
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	6.70	0.9256
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.003G023000 [exp]	10.72	0.9034
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	10.81	0.9211
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G020895 [exp]	11.31	0.8857
AT5G38260			Protein kinase superfamily pro...		Potri.004G097000 [exp]	11.83	0.9305
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G028600 [exp]	12.96	0.8779

Compare expression of checked genes

Potri.012G028101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.