Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 316 / 5e-93 AtRLP6 receptor like protein 6 (.1) AT1G71400 260 / 6e-74 AtRLP12 receptor like protein 12 (.1) AT5G25910 253 / 8e-72 AtRLP52 receptor like protein 52 (.1) AT3G28890 248 / 9e-71 AtRLP43 receptor like protein 43 (.1.2) AT2G33060 246 / 3e-69 AtRLP27 receptor like protein 27 (.1) AT5G27060 245 / 4e-68 AtRLP53 receptor like protein 53 (.1) AT1G71390 239 / 5e-67 AtRLP11 receptor like protein 11 (.1) AT3G23110 236 / 2e-65 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT2G32680 235 / 8e-65 AtRLP23 receptor like protein 23 (.1) AT3G25020 228 / 1e-62 AtRLP42 receptor like protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G009200 [exp] 1345 / 0 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.012G027600 [exp] 974 / 0 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G028101 [exp] 943 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G010445 [exp] 905 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G025400 [exp] 892 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G028500 [exp] 889 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G028600 [exp] 864 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G007932 [exp] 860 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1) Potri.012G031251 [exp] 849 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 310 / 2e-90 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 283 / 2e-80 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 271 / 9e-77 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 255 / 4e-71 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 239 / 1e-65 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10011039 [exp] 226 / 1e-60 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 222 / 2e-60 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 217 / 8e-59 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10024721 [exp] 216 / 2e-58 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10001035 [exp] 216 / 9e-58 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G028366.1 pacid=42783073 polypeptide=Potri.012G028366.1.p locus=Potri.012G028366 ID=Potri.012G028366.1.v4.1 annot-version=v4.1 ATGGGGTTTTTACCGCTGTCCCTCTCTCAATCTCTGTCTTTCATTCTGTTTCTCTTCCATTTCCATTCAACAATTTCATCTCCACTCTCCTCAAATTACC AATCTCTTTCTCTCCTTCAATTCAAACAATCTTTCTCCATCAGTAGATCTGCTTCGTCGGAGGACTATTGTCAATATCCCTTTCCAAAAACAGAGTCATG GAAAGAGGGTACAGGCTGCTGCTTGTGGGATGGGGTCACTTGTGACCTGAAAACCGGGCATGTCACTGGATTGGACCTCTCTTGCAGCATGCTTTACGGC ACCCTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAGAACCTCGACCTCTCTTTCAATGATTTCAACTCCTCTCATATTTCTTCTCGATTTG GCCAGTTCTCCAGTCTAACACATCTTAACCTCAGTGGTTCAGTTCTTGCAGGCCAAGTTCCATCAGAAGTCTCTCACCTCTCCAAATTGGTTTCTCTTGA TCTCTCTTTGAACTACGGTCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGATTTGAGTTCAGTAGAC ATGTCACTACTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCACTGCCTGTGGATTGCAAGGAAAACTCATATCCTCAA TGGGGAAATTTAAGCACCTGCAGTACTTGGGTCTTGGAGGGAACAATCTTACTGGTCCAATTCCACATGATTTTGATCAACTCACTGAGTTGGTTTCACT TGATCTCTCTGACAATGTCTATCTGAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGACTTGAGTTGGGTA GACATGTCACTACTTGTTCCCGATTCCTTGAGGAATCTGTCCTCTTCTCTGTCATCACTGAAACTCATTTACTGTAGATTGCAAGGAATCCATTCACTTA GTAATCTCATACAGCTCACTTATTTAGACCTTTCAGGTAACAATTTGAACGGTCAAATCGTATCATCACTCGGTAATCTCACACAGCTCACCTATTTAGT CATCTCAGGTAACAATTTGAACAGTCAAATCACATCATCACTCGGTAATCTCACACAGCTCACCTATTTAGACCTCTCAGGTAACAATTTGATCAGTCAG ATCCCATCATCACTTGGTAATCTCACACAGCTCACCTTTTTAGACCTCTCAAATAACAATTTGAGCGGTCAGATCCCATCATCACTTGGAAACCTTGTAC AACTTCGTTACTTGTGTCTCTCTTCCAATAAATTTATGGGTCAAGTTCCAGATTCTTTGGGTAGCCTAGTCAATTTGCGTGGTCAGATCATATCATCACT TAGTATTGTCACACAGCTCACCTTTTTAGACCTCTCACGTAACAATTTGAGCGGTCAGATCCCATCATCATTTGGAAACCTTGTTCACCTTCGTTCCTTG TTTCTCGGTTCCAATAAATTTATGGGTCAAGTTCCAGATTCTTTAGGTAGCCTAGTCAATCTTTCAGATTTAGATTTATCCAATAATCAACTAGTAGGCT CTATTCATTCTCAATTAAATACCCTTTCAAATCTACAATCTCTATATTTATCCAATAACTTGTTCAATGGAACAATACCATCCTCTTTTTTCGCTCTTCC TTCTTTACAAAATCTTGACCTTCATAACAATAATCTCATAGGCAATATAAGTGAATTCCAACACAATTCTTTGAGATTCCTTGATTTGAGCAATAACCAC TTGCATGGTCCGATCCCAAGTTCGATTTCCAATCAAGAGAACTTGACAGCCCTTATTCTTGCGTCCAATAGTAAATTAACAGGTGAGATTTCTTCTTCTA TTTGCAAGCTGAGATGCCTTCTAGTCCTGGACTTGTCCAACAATAGCTTGAGTGGTTCTACGCCACTATGTTTGGGGAACTTCAGCAACATGCTCTCAGT ATTGCATCTTGGCATGAACAAACTTCAAGGCATTATCCCTTCAATATTTTCAAAGGATAATAGCTTGGAATATCTCAACCTCAATGGAAATGAATTAGAA GGGAAAATACCACTGTCTATCATCAACTGCACAATGTTGGAAGTTATTGATCTTGGCAACAATAAGATTGAGGATACATTTCCCTACTTTCTAGAAACGC TTCCAGAGCTGCAAGTTCTTGTCCTAAAATCCAATAAACTCCAAGGTTTTGTGAAGGGTCCGATTGCATATAATTCCTTCTCTATATTACGGATTCTTGA CATCTCTGACAACAATTTTAGTGGGCCATTGCCAACTGGGTATTTCAATAGCCTTGAAGCAATGATGGCCTCGGATCAAAACATGGTTTACATGGGGACA ACAAATTACACTGGCTATGACTATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGAGTTTACGAAGATCCGAAGTACTATCAAAGTACTTGATTTGT CAAATAACAATTTCACCGGAGAGATTCCAAAAGCGATCGGAAAGCTTAAAGCACTCCATCAGCTCAACCTTTCTTATAATTTCCTTACAGGTCATATCCA ATCATCATTAGAAAATTTGAACAATTTGGAATCATTAGATCTATCTTCAAATTGTTGGTGGGAGAAACCACTGGTGGTGGCTTTGAACCACTCGGAGGGG ATAAAACACACTGTTTTATTACAAGAACAGAAGCTTACAATTAATTAA
AA sequence Show only first row Show all	>Potri.012G028366.1 pacid=42783073 polypeptide=Potri.012G028366.1.p locus=Potri.012G028366 ID=Potri.012G028366.1.v4.1 annot-version=v4.1 MGFLPLSLSQSLSFILFLFHFHSTISSPLSSNYQSLSLLQFKQSFSISRSASSEDYCQYPFPKTESWKEGTGCCLWDGVTCDLKTGHVTGLDLSCSMLYG TLLPNNSLFSLHHLQNLDLSFNDFNSSHISSRFGQFSSLTHLNLSGSVLAGQVPSEVSHLSKLVSLDLSLNYGLSLEPISFDKLVRNLTKLRELDLSSVD MSLLVPDSLMNLSSSLSSLKLTACGLQGKLISSMGKFKHLQYLGLGGNNLTGPIPHDFDQLTELVSLDLSDNVYLSLEPISFDKLVRNLTKLRELDLSWV DMSLLVPDSLRNLSSSLSSLKLIYCRLQGIHSLSNLIQLTYLDLSGNNLNGQIVSSLGNLTQLTYLVISGNNLNSQITSSLGNLTQLTYLDLSGNNLISQ IPSSLGNLTQLTFLDLSNNNLSGQIPSSLGNLVQLRYLCLSSNKFMGQVPDSLGSLVNLRGQIISSLSIVTQLTFLDLSRNNLSGQIPSSFGNLVHLRSL FLGSNKFMGQVPDSLGSLVNLSDLDLSNNQLVGSIHSQLNTLSNLQSLYLSNNLFNGTIPSSFFALPSLQNLDLHNNNLIGNISEFQHNSLRFLDLSNNH LHGPIPSSISNQENLTALILASNSKLTGEISSSICKLRCLLVLDLSNNSLSGSTPLCLGNFSNMLSVLHLGMNKLQGIIPSIFSKDNSLEYLNLNGNELE GKIPLSIINCTMLEVIDLGNNKIEDTFPYFLETLPELQVLVLKSNKLQGFVKGPIAYNSFSILRILDISDNNFSGPLPTGYFNSLEAMMASDQNMVYMGT TNYTGYDYSIEMTWKGVEIEFTKIRSTIKVLDLSNNNFTGEIPKAIGKLKALHQLNLSYNFLTGHIQSSLENLNNLESLDLSSNCWWEKPLVVALNHSEG IKHTVLLQEQKLTIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028366 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009200 [exp]	1.00	0.9899
					Potri.015G140800 [exp]	6.63	0.9181
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	7.93	0.9209
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154500 [exp]	8.66	0.8897
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	10.39	0.9109
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	16.30	0.9149	Pt-GLUR3.3
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	17.88	0.9113
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	18.00	0.9149
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	18.70	0.9107
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	20.49	0.9063

Compare expression of checked genes

Potri.012G028366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.