Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53180 608 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G01150 509 / 1e-180 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT1G43190 140 / 4e-37 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020800 [exp] 764 / 0 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.017G085400 [exp] 550 / 0 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.004G123300 [exp] 548 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.002G066000 [exp] 138 / 3e-36 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 134 / 9e-35 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014931 [exp] 672 / 0 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10038820 [exp] 609 / 0 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10005233 [exp] 522 / 0 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10030688 [exp] 488 / 2e-171 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10028566 [exp] 97 / 1e-21 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 93 / 4e-20 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10026413 [exp] 42 / 0.0004 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.012G029300.6 pacid=42782975 polypeptide=Potri.012G029300.6.p locus=Potri.012G029300 ID=Potri.012G029300.6.v4.1 annot-version=v4.1 ATGTCCTCTGTCTCGAGTCAGCCGCAGTTCCGTCTTACCCAACCACCGTCTAAGGTGTTGCATTTGAGAAATTTGCCATGGGAGTGTACTGAAGAGGAAT TAGTTGAGCTGGGGAAGCCATTTGGTAAAGTTGTTAACACCAAGTGTAATGTTGGGCCGAACAGAAATCAAGCTTTTATTGAATTTTCGGATTTGAATCA AGCTATTGCAATGATATCATATTATGCATCATCCTCGGAGCCTGCTCAAGTGCGAGGGAAGACAGTTTACTTACAGTATTCTAACAGGCAAGAAATAGTG AACAACAAAACAACAGCTGATGTTGGTGGAAATGTATTGCTGGTTACCATTGAAGGGGCAGATGCACGCCTTGTCAGCATTGATGTTTTGCACCTGGTAT TTTCTGCTTTTGGGTTTGTTCATAAGATTACTACCTTTGAGAAGACAGCCGGGTTCCAGGCGTTGGTGCAATTCTCCGATGCTGAAACTGCCTCTTCTGC AAAAAATGCCCTGGATGGAAGAAACATCCCTAGTTATCTGCTTCCTGAACATCTTGGGCCATGTACTCTTAGGATCACATATTCTGCGCATACAGATTTG AGTGTAAAATTCCAGAGCCATCGAAGCAGGGACTACACCAATGCAAACCTTCCTGTTGCACCATCAGCTATAGATGCAAATGGAATGTTTAGCGTGGGCC TTGATGGGAAAAAACTAGAACCTGAGAGCAATGTTCTTCTTGCTTCTATTGAGAACATGCAGTATGCTGTCACTTTGGATGTTTTACACATGGTCTTTTC TTCTTTTGGTCCTGTTCAGAAGATTGCCATGTTTGATAAGAATGGTGGACTTCAGGCTTTAATTCAATACCCTGATGTTCAGACAGCTGTTGTTGCCAAA GAAGCGTTGGAAGGACACTGCATCTATGATGGAGGGTTTTGCAAACTTCACCTCTCATACTCGCGCCATAGTGATCTCAGTATAAAGGTCAATAATGATA GGAGCAGAGACTACACAATTCCCAACACTGTAATGATGAACCCGCAGCCTTCAATTCTGGGGCAGCAGCCAGTTGCAACACATGGTCCTCCTGCACATAC ATACCCTGGAGCTCAGCATCATCAGATGATGCCTCAGCCTTCTGCTGGATGGGCCACAGGTGGTCCACCGGTACCCCATTCTATGCCTGCCCAAATGAAT AATAATCCTTACTTGCCACCTGGAACCATGCCACCTCAAATGGGTCACGGAATGATGCAGATGCCCAACCACGGTGGCCTGCCACATGCTCCTGCAATGC CTCCTTACAGACCTGGTCATATGCAATAG
AA sequence Show only first row Show all	>Potri.012G029300.6 pacid=42782975 polypeptide=Potri.012G029300.6.p locus=Potri.012G029300 ID=Potri.012G029300.6.v4.1 annot-version=v4.1 MSSVSSQPQFRLTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFIEFSDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV NNKTTADVGGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRITYSAHTDL SVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK EALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQPSILGQQPVATHGPPAHTYPGAQHHQMMPQPSAGWATGGPPVPHSMPAQMN NNPYLPPGTMPPQMGHGMMQMPNHGGLPHAPAMPPYRPGHMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.012G029300 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	9.64	0.7226
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	13.60	0.7017
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	14.14	0.7065
AT2G42040			unknown protein		Potri.016G058100 [exp]	22.00	0.7341
AT5G64880			unknown protein		Potri.007G081700 [exp]	27.00	0.6497
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	27.27	0.6870
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	30.00	0.6446	Pt-CUL1.3
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.017G085400 [exp]	32.58	0.6676
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Potri.010G191800 [exp]	34.38	0.6894
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	43.37	0.6865

Compare expression of checked genes

Potri.012G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.