Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16420 707 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 231 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 226 / 4e-65 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 213 / 6e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 216 / 2e-62 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 212 / 4e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 206 / 7e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G48810 204 / 6e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 197 / 1e-55 RPF2 rna processing factor 2 (.1) AT2G06000 191 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 227 / 5e-68 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 226 / 2e-66 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 223 / 3e-65 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G103600 [exp] 219 / 2e-64 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 219 / 1e-63 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 218 / 2e-63 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 216 / 1e-62 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 214 / 7e-62 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G148700 [exp] 214 / 1e-61 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005989 [exp] 701 / 0 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030222 [exp] 392 / 3e-134 AT5G16420 377 / 1e-128 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006373 [exp] 235 / 2e-68 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 233 / 3e-68 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 231 / 1e-67 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 232 / 3e-67 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 224 / 6e-67 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 230 / 1e-66 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 218 / 2e-62 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030223 [exp] 202 / 2e-62 AT5G16420 188 / 1e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G031600.1 pacid=42783695 polypeptide=Potri.012G031600.1.p locus=Potri.012G031600 ID=Potri.012G031600.1.v4.1 annot-version=v4.1 ATGTTCTGTCATGCTCGATCTCATCTCCGCCGCCCCAACATCAAACTAACCACCACTCTCCTCCGTACTCTAACCACCGTCGGCGCCGCCGCCTATCCTG AGATCCCACTCCTCCAAGAATCTACCTCCTACACAGTAACACCCCCAATAAAACCCTGGCCTCAACGTCTCTACCCAAAACGCCTAATCTCCATGATTAC CCACCAAGAAAATCTCGACCTTGCCTTCCAAATCTTCGACTACGCTGGAAAATATCACCCTGGTTTCTCCCATACTTACGACACTTACCACTCCATCATC GACAAGCTCTCTCGTGCTCGCGCCTTTGATGGGGTAGAATCTCTACTCTCTCAACTGTCACGTAACTCCTCTCACATCAAATGCGGCGACGATGTTTTTA TCTCTGTAATTCGCAATTATGGCCTTGCAGGTAGGCCTAGATTAGCCCTCAAAACATTTACGCGAATCAAAGAAGAATTCAGTATGCAGCCTTCTGTGAA ATTATTGAATACTTTATTGAATGTTTTTGTGCAGAATAAAAGGTATGATTTAGTGGGTTCTACGTTGAAAAATTGTAAAGATAAATATGGGGTTTTGCCT AATGTGTTTAGTTTTAATATTTTGATTAAGGCTCTGTGTAAAAAGAATGACGTAGAAAATGCTCTTAAGGTGTTCGATGAAATGCCCACGATGGGAATGA TTCCAAATCTGGTGACTTATACGACAATTTTAGGTGGGTTTGTTTCACGGGGCGATTTGGTTAATGCTGAGAAGGTTTTTAGTGAGATTTCGGATAAAGG GTGGTTGCCGGATGCGACTACTTATACAGTTTTGATGGTTGGGTATTGTAAACAAGGGAGGTTGAGTGATGCTATTAAGGTAATGGATAATATGGAGTAT AACGGGGTGGAGCCGAATGAGGTTACTTATGGGGTTATGATTGATGCTTATTGTAAAGAGAAAAAATCTGGTGAAGCTCGTAACTTGATTGATGATATGC TTGATAAGAAGTTTTTGCCAAGTTCGACCCTTTGTTGTAAGGTTATTGATGTGTTATGTGAGGACGGGAAGGTGGAGAATGCTTGTCATTTGTGGAAGAG GATGTTAGAGAAGAATTGTTTGCCAGATAATGCAATAATGAGCACACTTATACATTGGCTTTGTAAGGAGGGGAAAGTGTGGGAAGCCAGGAAATTGTTT GATGAGTTTGAGCAAGGTACGATTCCAAGTCTTATGACATATAATACTCTCATTGCAGGGATGTGTGAGAGAGGGGAGTTGAATGAGGCAGGCAGGTTGT GGGATGATATGGTGGAGAAGCGTTGCAGGCCCAATGCTTTTACATATAATATGTTGATTAAGGGTTTCATGAAGGCTGGGGTTGTGAAGGAGGGAGTTAG GATTCTTGAAGAGATGTTGGATAATGGGTGCTTGCCTAACAAGTCAACATACACATTATTGATTGAGGGGTTACAGGAATCGGGAATGGAAGGAGATGTG GATAAGGTTATGTCTATGGCCATGGCAAGCAGAGAAGTAGATGCTGATTCTTGGGATCTCTTCTTGCACAAGATTGTTGGTAATCTGGATTGTGGGACTG GTGCTCTTGATAGATTGTTAATGGAAAGTGCTACATAG
AA sequence Show only first row Show all	>Potri.012G031600.1 pacid=42783695 polypeptide=Potri.012G031600.1.p locus=Potri.012G031600 ID=Potri.012G031600.1.v4.1 annot-version=v4.1 MFCHARSHLRRPNIKLTTTLLRTLTTVGAAAYPEIPLLQESTSYTVTPPIKPWPQRLYPKRLISMITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSII DKLSRARAFDGVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYDLVGSTLKNCKDKYGVLP NVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEY NGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLF DEFEQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGDV DKVMSMAMASREVDADSWDLFLHKIVGNLDCGTGALDRLLMESAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	0	1
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Potri.010G172500 [exp]	1.00	0.8671
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	8.83	0.8081
AT1G54380			spliceosome protein-related (....		Potri.017G036200 [exp]	9.16	0.7402
AT1G18950			DDT domain superfamily (.1)		Potri.015G067300 [exp]	9.79	0.7834
AT5G22450			unknown protein		Potri.008G020600 [exp]	12.72	0.8078
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	14.00	0.7940
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	16.27	0.8031
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	16.85	0.8051	HAF902
AT5G04610			S-adenosyl-L-methionine-depend...		Potri.010G234600 [exp]	18.65	0.7102
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	22.13	0.7177

Compare expression of checked genes

Potri.012G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.