Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53210 302 / 5e-101 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 169 / 3e-51 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 110 / 7e-27 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 103 / 6e-25 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 102 / 1e-24 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 99 / 2e-23 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 96 / 3e-22 bHLH bHLH071 beta HLH protein 71 (.1) AT3G61950 94 / 1e-21 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46810 94 / 2e-21 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 83 / 6e-18 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022300 [exp] 486 / 1e-173 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 192 / 3e-60 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 158 / 1e-44 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 114 / 5e-29 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.014G106300 [exp] 115 / 8e-29 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 106 / 1e-25 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 100 / 5e-24 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 98 / 5e-23 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 98 / 7e-23 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001066 [exp] 271 / 4e-89 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038823 [exp] 273 / 1e-83 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10039328 [exp] 257 / 3e-83 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014938 [exp] 246 / 2e-80 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 153 / 1e-42 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 110 / 1e-26 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 99 / 1e-24 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 100 / 2e-24 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 100 / 8e-24 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 98 / 2e-23 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G031800.1 pacid=42784325 polypeptide=Potri.012G031800.1.p locus=Potri.012G031800 ID=Potri.012G031800.1.v4.1 annot-version=v4.1 ATGGTCAAACGTTCGTTCAAAATGACTGAGAGTTTGTCTGATTTTCTTGAAGAAGTACAACCTGAATTTGGCGACACTGCCTTTGATGCAGATGATTTGT TTGCTATTTTTGAGAGTTTAGACAGTGTAACAGATTTCCCTCCGGTAACACCATTAGACGAAGCTGTTGTTAGCTCAAAAGAAAGCGAAGAAACAAGGCA GTTGGTGTCACAAAAGTCTTCATCTTCTAACGCTTTGCATGATTTTGATGAGACCAATAATGAGCTTGAAACTTCTCCAAAAAGCAAGAGACAAAAGATT TCAGCGTCAGCAGCAGCCACAGCTTCTTCAGATCAGGAAGTAAATCCAGATGGGCAGCAACGTATGTCTCATATTACAGTGGAACGCAACCGGCGAAAGC AGATGAATGAGCACTTGTCTGTTTTAAGGTCCCTCATGCCTTGCTTCTATGTCAAAAGAGGAGACCAAGCATCAATAATAGGAGGAGTTGTTGATTACAT CAATGAGTTGCAGCAAGTTCTACAATCACTTGAAGCCAAGAAGAAAAGGAAAGTTTATAGTGAAGTTCTTAGCCCTAGGATTGTTTCAAGTCCAAGACCT TCACCACTTAGCCCTAGAAAACCACCACTAAGTCCTAGACTTAATTTGCCCATTAGCCCAAGAACTCCACAACCATGTAGTCCTTACAAGCCAAGAATAT TGCAACAAGGTTACCTTTCTCCTACCATGGCTAATTCACTTGAATCATCTCCATCTCCATCTTCTTCCTCCTCCATTAATGACAACATTAACGAACTCGT CGCGAATTCCAAGTCAGCAATTGCTGATGTTGAGGTTAAATTCTCAGGCCCAAATGTTCTATTGAAGACTGTATCTCCTCAGATTCCTGGTCAGGCTGTG AAAATAATTTCTGCCCTTGAAGACCTTGCCCTCGAGATTCTACATGTGAGCATTAGCATAGTAGATCATGAAACTATGCTCAACTCCTTCACAATCAAGA TTGGAATCGAATGCCAACTAAGCGCTGAGGAACTTGCTCAACAAATTCAGCTAACATTCTGCTAA
AA sequence Show only first row Show all	>Potri.012G031800.1 pacid=42784325 polypeptide=Potri.012G031800.1.p locus=Potri.012G031800 ID=Potri.012G031800.1.v4.1 annot-version=v4.1 MVKRSFKMTESLSDFLEEVQPEFGDTAFDADDLFAIFESLDSVTDFPPVTPLDEAVVSSKESEETRQLVSQKSSSSNALHDFDETNNELETSPKSKRQKI SASAAATASSDQEVNPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKKRKVYSEVLSPRIVSSPRP SPLSPRKPPLSPRLNLPISPRTPQPCSPYKPRILQQGYLSPTMANSLESSPSPSSSSSINDNINELVANSKSAIADVEVKFSGPNVLLKTVSPQIPGQAV KIISALEDLALEILHVSISIVDHETMLNSFTIKIGIECQLSAEELAQQIQLTFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Potri.012G031800 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G079100 [exp]	8.94	0.8942
AT5G05800			unknown protein		Potri.011G125150 [exp]	31.67	0.8552
					Potri.014G007300 [exp]	55.85	0.8526
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G009300 [exp]	68.78	0.8362
					Potri.003G116550 [exp]	70.31	0.8372
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	87.56	0.8245
AT4G32680			unknown protein		Potri.006G244600 [exp]	121.18	0.7952
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094100 [exp]	148.51	0.7768
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.019G079150 [exp]	151.82	0.7858
AT1G24140			Matrixin family protein (.1)		Potri.013G033200 [exp]	156.19	0.8085

Compare expression of checked genes

Potri.012G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.