Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27940 521 / 0 ATMTM1 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) AT2G46320 433 / 2e-151 Mitochondrial substrate carrier family protein (.1.2.3) AT4G26180 79 / 4e-16 Mitochondrial substrate carrier family protein (.1) AT3G55640 79 / 5e-16 Mitochondrial substrate carrier family protein (.1) AT3G21390 76 / 5e-15 Mitochondrial substrate carrier family protein (.1) AT5G56450 74 / 2e-14 PM-ANT Mitochondrial substrate carrier family protein (.1) AT1G14560 72 / 7e-14 Mitochondrial substrate carrier family protein (.1) AT5G48970 72 / 8e-14 Mitochondrial substrate carrier family protein (.1) AT3G53940 72 / 9e-14 Mitochondrial substrate carrier family protein (.1) AT5G51050 68 / 3e-12 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022700 [exp] 740 / 0 AT4G27940 514 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.002G167700 [exp] 456 / 1e-159 AT2G46320 424 / 3e-148 Mitochondrial substrate carrier family protein (.1.2.3) Potri.006G226300 [exp] 82 / 5e-17 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 80 / 2e-16 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 80 / 3e-16 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 79 / 4e-16 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 77 / 3e-15 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 74 / 2e-14 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 74 / 3e-14 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038825 [exp] 583 / 0 AT4G27940 538 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10014940 [exp] 578 / 0 AT4G27940 536 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10012635 [exp] 423 / 3e-147 AT2G46320 436 / 3e-153 Mitochondrial substrate carrier family protein (.1.2.3) Lus10013527 [exp] 83 / 2e-17 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 76 / 6e-15 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10006521 [exp] 73 / 5e-14 AT5G48970 527 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 71 / 2e-13 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 71 / 4e-13 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 69 / 1e-12 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 69 / 1e-12 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.012G032100.1 pacid=42784088 polypeptide=Potri.012G032100.1.p locus=Potri.012G032100 ID=Potri.012G032100.1.v4.1 annot-version=v4.1 ATGATGGGGTCAGAGATAACACGAAATCAATGGGAAGTAAACAATGATAGCAAGGGGCATGATTTATCATCGATGGTGGTTCTTCATGGCAGTCATGACC ACGGTGGATTGGCTGAGAGAGGCTTCTGTGATGCGCAGGTGCAACGACAACCGAATGGAGCAGCAGCAGCTGCAACAACAACAGATTGGAATTTAGGGAT CGGAGAAAGAGTTTTGTCTGCTGCTGGTGCTGCTTTTCTGTCTGCTATTGTTGTTAACCCTCTTGATGTTGTCAAGACAAGGTTGCAAGCACAGGCAGCT GGAGTTGCGTACTCACACCCACTAAGTAACATTATAAGTCGAATGGCATATTTTGGGCCAACCATGATGTTTGCTGATCTTAGGTGTTCGCCATCATGTA CACGTGCTGGGGTTCATGGAACAGTGTTGATTTGTCCTCCAGATTGTTTTCAGTATAAGGGAACTCTGGATGTTTTCTACAAAATCATTCGACAGGAAGG ATTTGCGAGGCTGTGGAGAGGTACAAATGCTGCTCTGGCCCTGGCTGTGCCAACAGTTGGGATCTACCTACCATGCTATGATTTATTTCGTAATTGGCTG GAGGATCTAACTGCCCAAAATATTCCTGGTGCCACACCTTATGTGCCTTTGGTAGCAGGCTCATTGGCACGTTCGTTAGCTTGTGCAACTTGCTACCCTA TCGAACTTGCTAGAACCCGCATGCAGGCATTTAAGGCAACTCAAACTGGTAAACCTCCCGGAGTTTGGAAAACACTACTCGAGGTCCTCTCCCATGTCAG AAGTACAAACAATGTTCAAAACACAAGAGGCTACCGCTTCTTGTGGACAGGCATGGGAGCACAACTTGCTCGTGATGTTCCGTACTCAGCAATTTGTTGG TCAACCCTTGAGCCAATCAGGAGAAGGCTCCAAAGTTTGGTTGGCGAGGAATCCAATGGTTTGAGTGTCTTTGGAGCAAACTTTTCTGCTTCTTTTGTCG CAGGAAGTCTTGCTGCTGCTGCTACATGCCCTCTAGATGTTGCAAAAACCCGCAGGCAGATAGAGAAGGATCCTGTCAGAGCATTGAGGATGACTACCCG GCAAACATTGATGGAAGTTTGGAGGGATGGAGGAATAAGGGCACTGTTCACAGGTGTTGGTCCTCGTGTTGGTCGTGCCGGGCCATCTGTTGGGATTGTA GTTTCATTTTATGAAGTTGCGAAGTATGCTCTACATCACCGATATGCGACTTCAGAATAA
AA sequence Show only first row Show all	>Potri.012G032100.1 pacid=42784088 polypeptide=Potri.012G032100.1.p locus=Potri.012G032100 ID=Potri.012G032100.1.v4.1 annot-version=v4.1 MMGSEITRNQWEVNNDSKGHDLSSMVVLHGSHDHGGLAERGFCDAQVQRQPNGAAAAATTTDWNLGIGERVLSAAGAAFLSAIVVNPLDVVKTRLQAQAA GVAYSHPLSNIISRMAYFGPTMMFADLRCSPSCTRAGVHGTVLICPPDCFQYKGTLDVFYKIIRQEGFARLWRGTNAALALAVPTVGIYLPCYDLFRNWL EDLTAQNIPGATPYVPLVAGSLARSLACATCYPIELARTRMQAFKATQTGKPPGVWKTLLEVLSHVRSTNNVQNTRGYRFLWTGMGAQLARDVPYSAICW STLEPIRRRLQSLVGEESNGLSVFGANFSASFVAGSLAAAATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWRDGGIRALFTGVGPRVGRAGPSVGIV VSFYEVAKYALHHRYATSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	0	1
AT1G69400			Transducin/WD40 repeat-like su...		Potri.010G162700 [exp]	2.00	0.8078
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	5.65	0.8347	CYP89A27P
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.005G224500 [exp]	6.08	0.7333	ATTIM44.2
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	10.24	0.8074
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	16.94	0.7844
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	17.08	0.7934
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	21.79	0.7906
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G185900 [exp]	25.23	0.7220
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Potri.001G348200 [exp]	27.64	0.6582
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	27.92	0.7874

Compare expression of checked genes

Potri.012G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.