Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53280 290 / 2e-98 PDV1 plastid division1 (.1) AT2G16070 49 / 2e-06 PDV2 plastid division2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022900 [exp] 447 / 3e-160 AT5G53280 259 / 2e-86 plastid division1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039325 [exp] 327 / 1e-112 AT5G53280 268 / 1e-89 plastid division1 (.1) Lus10027574 [exp] 314 / 1e-107 AT5G53280 273 / 6e-92 plastid division1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G032200.1 pacid=42783324 polypeptide=Potri.012G032200.1.p locus=Potri.012G032200 ID=Potri.012G032200.1.v4.1 annot-version=v4.1 ATGAAATGGGACATGGAGCTCGAAGAAATAGAAGCTGTCCTAGAAAAAATATGGGACTTACACGACAAATTGAGCGACGCTATTCACTCAATTTCACGCT CTCACTTCCTCCACTCAATCAAATCCCTCAAAACCACCACCACCACCACCAACAAGAAGCTCAACAACGAAAACGATGTCGGATTTGAAGACAACAACAG CAACAGCAACAATCGGGCATCTGGGTTCGTTTTTTTTAAGGATTTTCGAGTTGATGGGAACGACTTGTCGACCATTCAAGAGGCTAAGAGTCTTAACTCT ATTCGGACTGCTCTCGAGAATCTTGAAGATCAATTGGAGTTCTTTCATACAGTACAAATACATCAGCGGGCTGAGATAGATGCTGCAATTGCTCGACTAG AACAAAGCAGGATTATTCTGGCTATGAGATTGGCTGAACACCATGGTAAGAAGTACAAAGTAATTGAAGAAGCTCTGGCATTTGTCGGGGATGTACATGA TGCAAGTCAATTTGTGTCCCCTGAAAACCTTTATGGTTCTCCTACAAGCCCATTAGGTGAGAACCTGATTAGGCGTGAAGGGAAGAGGCCTAACACAGTG ATCAAAGTTCTCCTTTCGAGTTTTGAATTTGCAAAGAAATCCCTCAAATTGGATCATGTTGGTGGCCTATTGGGCAATGCTGCTTTATTCACAGTTAGCA TGATTGCGATGCTCCATCTGCATCAGGTTGCCCACAATCACCATCCATATAAACAAGAAGATCTTTACAGCGACAGGAATGGGAAGAAAGCTTTTGGGCT GGAAGGATCTTCATCCAATGGTAGTCTGGACCACTTGGATGTGATGTTAGCCAGGGGTTGA
AA sequence Show only first row Show all	>Potri.012G032200.1 pacid=42783324 polypeptide=Potri.012G032200.1.p locus=Potri.012G032200 ID=Potri.012G032200.1.v4.1 annot-version=v4.1 MKWDMELEEIEAVLEKIWDLHDKLSDAIHSISRSHFLHSIKSLKTTTTTTNKKLNNENDVGFEDNNSNSNNRASGFVFFKDFRVDGNDLSTIQEAKSLNS IRTALENLEDQLEFFHTVQIHQRAEIDAAIARLEQSRIILAMRLAEHHGKKYKVIEEALAFVGDVHDASQFVSPENLYGSPTSPLGENLIRREGKRPNTV IKVLLSSFEFAKKSLKLDHVGGLLGNAALFTVSMIAMLHLHQVAHNHHPYKQEDLYSDRNGKKAFGLEGSSSNGSLDHLDVMLARG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	0	1
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.014G109400 [exp]	1.41	0.8226
AT1G52730			Transducin/WD40 repeat-like su...		Potri.003G059500 [exp]	4.69	0.7873
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	8.00	0.7289	FUS12.2
AT5G50090			unknown protein		Potri.015G072501 [exp]	13.60	0.6762
AT1G27435			unknown protein		Potri.001G325000 [exp]	15.36	0.7439
AT5G27430			Signal peptidase subunit (.1)		Potri.006G234600 [exp]	15.81	0.7402	SPP.3
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	17.02	0.7237
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	17.43	0.7146
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	17.97	0.7121	RAB11.3
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.001G207900 [exp]	18.02	0.7166	EMB143.2

Compare expression of checked genes

Potri.012G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.