Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15290 207 / 1e-68 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 176 / 4e-56 Uncharacterised protein family (UPF0497) (.1) AT2G36100 153 / 4e-47 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT3G11550 142 / 8e-43 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT5G06200 142 / 9e-43 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT2G27370 141 / 2e-42 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT1G03700 73 / 2e-16 Uncharacterised protein family (UPF0497) (.1) AT5G44550 71 / 2e-15 Uncharacterised protein family (UPF0497) (.1) AT3G06390 67 / 9e-14 Uncharacterised protein family (UPF0497) (.1) AT4G03540 64 / 6e-13 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088700 [exp] 170 / 4e-54 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 150 / 1e-45 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 147 / 9e-45 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 143 / 3e-43 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 120 / 2e-34 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 70 / 4e-15 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 70 / 6e-15 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 61 / 8e-12 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 58 / 1e-10 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015375 [exp] 246 / 6e-84 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 243 / 8e-83 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 187 / 2e-60 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 161 / 3e-50 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 158 / 3e-49 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 155 / 4e-48 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 157 / 1e-44 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017008 [exp] 129 / 2e-37 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 121 / 1e-34 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 105 / 3e-29 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.012G032300.1 pacid=42783714 polypeptide=Potri.012G032300.1.p locus=Potri.012G032300 ID=Potri.012G032300.1.v4.1 annot-version=v4.1 ATGAAGGCAGGTCCCATTGAGCTCGGTGAGGGAAAGAGTTCAGCCCCGAAAGCCGCGGTGAACAGAGGGGTGGCTATACTTGATTTCATCTTGAGGATAC TTGCATTCATTGGTACCCTAGGGAGTGCAATTTCCATGGCAACAACTAATGAAACACTTCCTTTCTTCACACAGTTTATTCGGTTCAGGGCCGAGTACGA TGATCTTCCAACGTTCACGTTTTTTGTGGTTGCCAATGGCGTTGTAAGCGCCTATCTGCTTTTTTCTCTCCCATTTTCCATCTTCAACATTGTGAGGAGC AAAGCACAAAACAGTAGAATTCTTTTGATCATCCTTGATACGGCAATGCTTGGTCTTTTGTCCGCCGGAGCTTCTGCAGCGGCAGCTATTGTGTACTTAG CACACCAAGGGAATGTGAGGACAAATTGGTCTGCCATCTGCCAACAATTCAACTCCTTCTGCGAGCGTATCTCTGGCTCCTTGATTGGATCCTTCATTGG AGTAGTTGTGTTCATACTGCTAATCTCGTTGTCTGCAGTGGCTCTTTCTCGCCATAAATAG
AA sequence Show only first row Show all	>Potri.012G032300.1 pacid=42783714 polypeptide=Potri.012G032300.1.p locus=Potri.012G032300 ID=Potri.012G032300.1.v4.1 annot-version=v4.1 MKAGPIELGEGKSSAPKAAVNRGVAILDFILRILAFIGTLGSAISMATTNETLPFFTQFIRFRAEYDDLPTFTFFVVANGVVSAYLLFSLPFSIFNIVRS KAQNSRILLIILDTAMLGLLSAGASAAAAIVYLAHQGNVRTNWSAICQQFNSFCERISGSLIGSFIGVVVFILLISLSAVALSRHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15290		CASP5	Casparian strip membrane domai...		Potri.012G032300 [exp]	0	1
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103600 [exp]	1.41	0.9595
					Potri.014G178900 [exp]	2.00	0.9569
					Potri.016G047700 [exp]	4.58	0.9542
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.002G036100 [exp]	5.09	0.8960
AT4G08780			Peroxidase superfamily protein...		Potri.003G214900 [exp]	5.19	0.9262
					Potri.001G472101 [exp]	5.65	0.9423
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	6.92	0.9337	PSCLRR52.53
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	8.36	0.9224
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	9.16	0.9338
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.001G161200 [exp]	9.16	0.9189

Compare expression of checked genes

Potri.012G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.