Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 656 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 566 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 547 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 533 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 525 / 1e-180 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 526 / 2e-180 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 499 / 6e-170 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 488 / 2e-165 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 420 / 4e-139 RKL1 receptor-like kinase 1 (.1) AT3G02880 405 / 1e-133 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023500 [exp] 1066 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 772 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 760 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 587 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 577 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 563 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 543 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 513 / 2e-175 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 434 / 4e-145 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027568 [exp] 730 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 723 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 719 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 716 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 690 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 676 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 579 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 578 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 570 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 565 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G033200.7 pacid=42782935 polypeptide=Potri.012G033200.7.p locus=Potri.012G033200 ID=Potri.012G033200.7.v4.1 annot-version=v4.1 ATGAACATGAAAAGAGGTCTGCTGTTCATTTTCTCAGCATTCCTCTTCTTTGGAGAAGTTCTCTTGTCAATCACTGCTGACCCAGTTGATGATAAACAAG CTTTATTGGATTTCCTTCACAATATTCTTCACTCTCACCCTGTCAATTGGCATGAGAATACTTCTGTGTGCAATAGCTGGACAGGTGTGTCCTGTAGCAA TGATAACTCTAGAGTTACAGCCCTCAGGTTGCCTGGAGTCGGTTTTCGTGGCCCAATTCCACCCAACACTCTTAGTCGTTTGTCAGCAATTCAGATCCTA AGCCTCAGATCTAATGGTATATCAGGTTCTTTCCCTTATGATGAATTCTCCAAGCTCAGAAACTTAACTATCCTTTTTCTTCAATCCAACAACTTCTCTG GCCCATTGCCTTCAGATTTCTCAATTTGGAATTATCTCACTATTCTTAATCTTTCCAATAATGGCTTCAATGGGAGAATTCCACCTTCAATATCAAATTT GACTCACCTCACAGCTTTGAGCCTTGCTAACAACTCCCTTTCAGGCAATATTCCCGATATAAATGTTCCTAGTTTACAACATCTAGATTTAACCAACAAT AATTTTACAGGAAGTTTGCCTAAGTCTCTTCAAAGATTTCCAAGTTCTGCATTTTCTGGTAACAATCTTTCATCAGAAAATGCCCTTCCTCCTGCTCTTC CAATTCATCCACCAAGTTCCCAACCATCAAAAAAATCCTCAAAATTAAGTGAACCTGCAATATTGGCGATTGCTATTGGTGGCTGTGTACTGGGATTTGT GGTTCTTGCTTTTATGATTGTTGTTTGCCACTCTAAGAAACGAAGGGAAGGTGGGTTAGCAACAAAGAACAAAGAGGTGTCTTTGAAGAAAACAGCTTCA AAGAGCCAAGAGCAGAACAACAGGCTATTCTTTTTCGAGCATTGTAGTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCAGAGGTTCTTGGTA AGGGAACGTTTGGGATAGCTTATAAGGCCGCACTCGAGGAGGCAACCACAGTGGTGGTGAAGAGGTTGAAGGAAGTGGCTGTGCCAAAAAAGGAGTTTGA GCAGCAAATGATTGCCGTTGGGAGTATTAGGCATGTGAATGTGTCTCCATTAAGGGCGTATTACTATTCCAAGGATGAGAGACTAATGGTCTATGATTTC TATGAAGAGGGCAGTGTGTCTGCAATGCTACATGTTAAGAGAGGGGAGGGCCATACTCCTATGGACTGGGAAACAAGGCTGAAAATTGCAATTGGTGCAG CAAGGGGCATTGCTCATATCCACACACAGAATGGTGGCAAACTTGTCCATGGAAACATAAAATCCTCAAACATTTTCCTCAATTCCCAAGGACATGGCTG CGTATCAGATATCGGTTTGGCATCATTGATGAGCCCAATGCCCCCGCCAGTAATGAGGGCTGCAGGCTATCGTGCCCCAGAAGTAACAGACACCAGGAAA GCAACCCATGCATCTGATGTCTACAGTTATGGGGTTTTTCTGCTTGAGCTTCTCACTGGAAAATCCCCCATGCATACCACAGGTGGTGATGAGGTTGTTC ACTTGGTGAGGTGGGTGAATTCTGTGGTAAGAGAAGAGTGGACTGCTGAAGTATTTGATTTAGAGCTGTTAAGGTATCCTAATATTGAGGAGGAAATGGT GGAGATGCTACAGATAGGACTGTCTTGTGTAGTGAGGATGCCAGAGCAGAGACCCAAAATGCCTGATGTGGTGAAAATGGTGGAGGAAATTCGGCAAGTA AGTACCGAAAACCCACCATCCTCTGACAGTAAACTAGAAATTTCAGTTGCAACCCCATCACCACAAGCAGCTGAAGTAGGTTCTACCTCTTCTGTTCAAT AG
AA sequence Show only first row Show all	>Potri.012G033200.7 pacid=42782935 polypeptide=Potri.012G033200.7.p locus=Potri.012G033200 ID=Potri.012G033200.7.v4.1 annot-version=v4.1 MNMKRGLLFIFSAFLFFGEVLLSITADPVDDKQALLDFLHNILHSHPVNWHENTSVCNSWTGVSCSNDNSRVTALRLPGVGFRGPIPPNTLSRLSAIQIL SLRSNGISGSFPYDEFSKLRNLTILFLQSNNFSGPLPSDFSIWNYLTILNLSNNGFNGRIPPSISNLTHLTALSLANNSLSGNIPDINVPSLQHLDLTNN NFTGSLPKSLQRFPSSAFSGNNLSSENALPPALPIHPPSSQPSKKSSKLSEPAILAIAIGGCVLGFVVLAFMIVVCHSKKRREGGLATKNKEVSLKKTAS KSQEQNNRLFFFEHCSLAFDLEDLLRASAEVLGKGTFGIAYKAALEEATTVVVKRLKEVAVPKKEFEQQMIAVGSIRHVNVSPLRAYYYSKDERLMVYDF YEEGSVSAMLHVKRGEGHTPMDWETRLKIAIGAARGIAHIHTQNGGKLVHGNIKSSNIFLNSQGHGCVSDIGLASLMSPMPPPVMRAAGYRAPEVTDTRK ATHASDVYSYGVFLLELLTGKSPMHTTGGDEVVHLVRWVNSVVREEWTAEVFDLELLRYPNIEEEMVEMLQIGLSCVVRMPEQRPKMPDVVKMVEEIRQV STENPPSSDSKLEISVATPSPQAAEVGSTSSVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	0	1
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	9.27	0.7154
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	9.53	0.7267
AT5G36930			Disease resistance protein (TI...		Potri.013G037599 [exp]	9.79	0.6925
AT1G26090			P-loop containing nucleoside t...		Potri.010G130700 [exp]	15.39	0.7104
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	20.39	0.6304
AT3G06880			Transducin/WD40 repeat-like su...		Potri.018G083600 [exp]	21.67	0.6103
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	22.44	0.6553
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	25.92	0.6484
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	29.15	0.6311
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	30.98	0.6518

Compare expression of checked genes

Potri.012G033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.