Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52950 546 / 3e-179 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027565 [exp] 759 / 0 AT5G52950 530 / 4e-173 unknown protein Lus10039318 [exp] 436 / 2e-141 AT5G52950 268 / 4e-79 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G033800.1 pacid=42784127 polypeptide=Potri.012G033800.1.p locus=Potri.012G033800 ID=Potri.012G033800.1.v4.1 annot-version=v4.1 ATGGCAGATCAAATCACAGACTACTCCAAGACCCAACGCATACTTCTTCTCATAGACCTAACCCCGCTTCTCCACGACTCCCCAACCCCTTACATCACTT CCCTTCTCTCCTCCATCAAACCTCTTCTCTCTTTCCCTCCTCTCTCCACTTCTCTCTTTTCTTTCAAACTCTTCTTCTCCTCCCTTTCCCCTCTTCTTTT CTCTTCAAAACTTCCCTTCCCTCCTTTTTCCCTCTCCTTTGACCACCCCAACAATACTCTTCACTCTATCACAACTTCTCTCACTTCTCTCTTGCCTAAA CATGAGCAATCTTCTTTTTCTTCGCTTTCGCCGAGGGCAGCCCATGTGGCTGCTCTGTTACAGGAGATACTTCATGAGTATGCCTGGGACTCTGATTCGT GCAATTCTATAATGGGTATGTCTCAAAGTTCTGATTCTTTTGTCATCAAGTCTAATTTGGTTATTCTGTTTTCACCAATTTTGAGGTCTTTTAAGTTTGT TTCGGAGTTTTTCAACGTGGAATTGAATGATGGGTGTTTGAGAGATGGAAGTTTGTTTCATGAGAAGTTCTGTGGGGTTTTTGAGAGTGTTAGTGAAGGG TTTGCTAGTAAAGATATTCACTTTGTTTGGGTTGATGTGAGATGTGAAGTTGGATGTGTTGGTGTCGATGAGTCCGAAGTGGTTTTTGAGTTTTTCAGGA GGGGGATTAAGGGTTTAGGTTGGGGGTTTTGTTCTAGTGATTCCATTGTGTTAGGTTCTGCTCTTGTTCCCTTTGGTTTGATTTATCCTAGGATTGGTGT TTCGCCGAAAGTTTTTGATTTTAATGCTTGTTGTAAGAGAGTTTGCGCGCAATTGAGTCTTGAGATATTAGATGTGAGTGAAAAGCCTTTGGAATGTAAG TGTTGTGATCTTGAATTGATTAACTTGGACGTTTTTTCTAGATTTAGCCAGAAATTCATGGATTTGGAATCAGGTAGTTGTGAACGAAGGGAAATGGTAT TGGAAGATTTTGGTGGTGGAGTTGCGAAATTACATGTTAAGGCAGTACAAATGCATGGTAAAGGTGTAAAATTTGAGGGGCCATTGTCAGATCCAATTCT TGTACGCGAGCTTTCAAGGGATGTTGCGAAAGATCAAAAAGAAAATTGCAGTGAGTTTTTTGAAGATAAGGTTCTTCAGATGTTGGGGATTGAAATGGGT GAGTTTGTATCTAGAAACTCCACACCCACCTGGCAAATTCTTTTGAGTTTTCTATACAGAGAAGGTTATTGGGCTCTGGTTTCTCTTTCAAAGGGTGATG GCAACTTGGTTACAGGAATCCTCAAGCCTTTTACAGTTTCTTCAGCTCTTTTCTTTATTGCAGGAGATCAATTTCACCCTCCTGTAGTTGCAGGTAAATT TGATGGAGTGAGTATGGGTCGAGTTGTTAAGAAGACAGAAAATGAGGCTTTCAAACAAAAAATCAATTTGAGCCACACCAATGGACTTATTGGTTCCCAA TCTGGGCACTCACCATTTGATAAGTGTGCTGAACTAGGAGGCTGTAAAAGGAAGAAGAAAAGGAGTTCAAATACGCTCAAGGAACTGACATGGAGGGCCT TCTGCAAGGCAGCACAGGAAGATTTTCAGATAGATTTAGAAGAGGTTTACTTTTCCAGGGGATGCAATCAGTCAAAGAAGTTGAAATTCCTGAAATGCTG GATGAAACAGATTAAGAAATCTAGCTATTGTAGCTGGGCCATGCCAGACAGTTCCAATCCATGCCAGGACATCCCAAAAGAAGTACATGACAGATTAAAT GCGTTGCCTCAGGAAAGCGAACAGCCAGTGACTTCTTGTGCTTCAATAGGAGAGGATTCTTTGACAGGGGCTTCTAGAATACAGGATGAAGCTGCTCTTG ATTTTCACTCTGGAACTTTGGAAAGTTTCTTCAGTGACCTTCCCCACAAAATCCAGCAAGGACTTGAGTCTGAAGAAGTAGACTTGGGGACATTGGCTGA GCGACTGGTGAATGCATCTATCTATTGGTTATATCAAAAGTGTGAAAAGGAAACGACCTCAGAGAATCAAACCACTGGTATAAAATCTGGCAGTGCTACT GCTAGTGTTGTTGCTATTGAGCTAGCAAAACTTCTACTTAGGGAGCCTAAAGATTTGGCTGCTATGTACAAAGACAGTGATGCATCTAACCCTAGTTTTG CTGAGGCTACATCAGAAAATATAGCTAGAGTATATGAACTGCAGATTTTGTTTCGTATGGAGATACTGCAATCAGAGGTTGGAGCAAGTATTGGGGAGTC TACGAAACATAGATTTGTGAAACATATTTGCTTGCTTTTAGAGACCATTCAATGCCATCTGAAGGGGGGCTTTTTTGGTGATTGGAGCCTCGATGCATAC GTGGGAAAGATTATAAATAACAGGTACTGTCAGAGTCTTGGTGGTGTTGTTCACAAAATCTATGAAAAAATGGATTTATTGCTGTTTTCTGAGGAAGATG AATTGCCTAATTCTGTCCTCAACAGTGAGGACAGTAATCAAACAAGGAGAGAAGAAATAGAACGAGATAAAATGGATGATAATAATAGAATTAATGATTC AGTCTCAGCAGAAGACGAGTCACTTCGACATGTTGAAAATGAGTTTCAAAGCCCCCAAGGTATGAGCCAGGAGGAGCATGCTCGAAAACTAATTGAAGCT CAAGCTAGAAGACAGAGGGCTCGAAGATTTGCATCTTTCACTAGCTGGGTTCCAGATTTGCAGAGAGTTTGGGCACCAAAGCAGCCAACGGCAATGAAAA TGAAGTCAGATCCTCTTCGTAAGCTGGCAAAAAGAAAGGAAAGAAGACGGGTAAATTATGATGTGGTTTTAGACACCCCAATGACTGGAAACAAGGGAGG AATAAACAGCGATGACAGGAACCACCAAGCTTATGGGACTTCCTTGTGTGGTTCTGTTTCCAAGGCTTTGTTTCAAGATGATGACTCGAGCTAA
AA sequence Show only first row Show all	>Potri.012G033800.1 pacid=42784127 polypeptide=Potri.012G033800.1.p locus=Potri.012G033800 ID=Potri.012G033800.1.v4.1 annot-version=v4.1 MADQITDYSKTQRILLLIDLTPLLHDSPTPYITSLLSSIKPLLSFPPLSTSLFSFKLFFSSLSPLLFSSKLPFPPFSLSFDHPNNTLHSITTSLTSLLPK HEQSSFSSLSPRAAHVAALLQEILHEYAWDSDSCNSIMGMSQSSDSFVIKSNLVILFSPILRSFKFVSEFFNVELNDGCLRDGSLFHEKFCGVFESVSEG FASKDIHFVWVDVRCEVGCVGVDESEVVFEFFRRGIKGLGWGFCSSDSIVLGSALVPFGLIYPRIGVSPKVFDFNACCKRVCAQLSLEILDVSEKPLECK CCDLELINLDVFSRFSQKFMDLESGSCERREMVLEDFGGGVAKLHVKAVQMHGKGVKFEGPLSDPILVRELSRDVAKDQKENCSEFFEDKVLQMLGIEMG EFVSRNSTPTWQILLSFLYREGYWALVSLSKGDGNLVTGILKPFTVSSALFFIAGDQFHPPVVAGKFDGVSMGRVVKKTENEAFKQKINLSHTNGLIGSQ SGHSPFDKCAELGGCKRKKKRSSNTLKELTWRAFCKAAQEDFQIDLEEVYFSRGCNQSKKLKFLKCWMKQIKKSSYCSWAMPDSSNPCQDIPKEVHDRLN ALPQESEQPVTSCASIGEDSLTGASRIQDEAALDFHSGTLESFFSDLPHKIQQGLESEEVDLGTLAERLVNASIYWLYQKCEKETTSENQTTGIKSGSAT ASVVAIELAKLLLREPKDLAAMYKDSDASNPSFAEATSENIARVYELQILFRMEILQSEVGASIGESTKHRFVKHICLLLETIQCHLKGGFFGDWSLDAY VGKIINNRYCQSLGGVVHKIYEKMDLLLFSEEDELPNSVLNSEDSNQTRREEIERDKMDDNNRINDSVSAEDESLRHVENEFQSPQGMSQEEHARKLIEA QARRQRARRFASFTSWVPDLQRVWAPKQPTAMKMKSDPLRKLAKRKERRRVNYDVVLDTPMTGNKGGINSDDRNHQAYGTSLCGSVSKALFQDDDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52950			unknown protein		Potri.012G033800 [exp]	0	1
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	2.23	0.7910	CHR927
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	3.16	0.7564
AT1G51610			Cation efflux family protein (...		Potri.010G251300 [exp]	3.16	0.7490
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	3.74	0.7775
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	5.74	0.7459
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	6.24	0.7422
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	9.38	0.7566
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	10.58	0.7548	MYB222
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	12.84	0.7301
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	13.07	0.7236	CHR932

Compare expression of checked genes

Potri.012G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.