Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 213 / 1e-69 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033866 [exp] 303 / 3e-105 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024100 [exp] 299 / 1e-103 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024000 [exp] 298 / 3e-103 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024150 [exp] 298 / 3e-103 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G023900 [exp] 298 / 3e-103 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G024200 [exp] 222 / 3e-73 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.014G091700 [exp] 213 / 1e-69 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 211 / 5e-69 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091600 [exp] 210 / 2e-68 AT5G24090 362 / 3e-126 chitinase A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027560 [exp] 228 / 2e-76 AT5G24090 295 / 4e-101 chitinase A (.1) Lus10039317 [exp] 223 / 9e-75 AT5G24090 300 / 2e-103 chitinase A (.1) Lus10023535 [exp] 210 / 3e-68 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10040420 [exp] 209 / 5e-68 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10040419 [exp] 204 / 5e-66 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009215 [exp] 202 / 4e-65 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10010137 [exp] 201 / 6e-65 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037985 [exp] 201 / 7e-65 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10009216 [exp] 201 / 1e-64 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10023534 [exp] 194 / 7e-62 AT5G24090 355 / 1e-123 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.012G033899.1 pacid=42782562 polypeptide=Potri.012G033899.1.p locus=Potri.012G033899 ID=Potri.012G033899.1.v4.1 annot-version=v4.1 ATGATGCGATGCAACTTGCCAATTATATTTGGAATAATTAACTTCCTTGGTGGTCAGTCCAGTTCACGTCCGCTAGGCGATGCCACCTTAGATGGGGTTG ATTTTGATATTGAGACTAGCTCAGGCCAGTTCTGGGATGACCTTGCTAGGGCACTTAGTGGATTTAGCCAACAAAGGAAGGTGTACTTAGCTGCAGCTCC ACAATGTTTCTTCCCTGATGCTAAACTAGACACTGCAATTAAAACTGGGCTGTTTGATTATGTGTGGGTTCAATTCTATAACAATCCTCAATGCCAATAC ACCAATGATGATGCTAACGGTCTCTTAAAAGCATGGAGCCAATGGACAACAGTTCAAGCAAATCAAGTATTCCTGGGACTACCGGCTGCTCCTGAGGCAG CAAACAGTGGTGGATTCATCCCTGCTGATGTGCTCACTTCCCAGGTTCTTCCATCTGTAAAGAATTCACCCAAATATGGAGGTGTCATGCTCTGGAACAA GCTGTTTCACAATGGATACAGTGCAGCTATAAAGGGCAGTGTCTAA
AA sequence Show only first row Show all	>Potri.012G033899.1 pacid=42782562 polypeptide=Potri.012G033899.1.p locus=Potri.012G033899 ID=Potri.012G033899.1.v4.1 annot-version=v4.1 MMRCNLPIIFGIINFLGGQSSSRPLGDATLDGVDFDIETSSGQFWDDLARALSGFSQQRKVYLAAAPQCFFPDAKLDTAIKTGLFDYVWVQFYNNPQCQY TNDDANGLLKAWSQWTTVQANQVFLGLPAAPEAANSGGFIPADVLTSQVLPSVKNSPKYGGVMLWNKLFHNGYSAAIKGSV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033899 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033866 [exp]	1.00	0.9803
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024150 [exp]	4.24	0.9447
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	4.89	0.9391	CHI3.7
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236800 [exp]	11.74	0.9436
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	13.85	0.9117	Pt-MIPS.2
					Potri.005G129050 [exp]	20.49	0.9387
AT2G23590		ATMES8	methyl esterase 8 (.1)		Potri.011G082400 [exp]	31.36	0.9422
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083300 [exp]	32.98	0.8767
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107950 [exp]	34.92	0.9391
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107800 [exp]	42.42	0.9351	Pt-OLP.5

Compare expression of checked genes

Potri.012G033899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.