Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52920 970 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 770 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT3G22960 389 / 2e-128 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT3G55650 285 / 2e-89 Pyruvate kinase family protein (.1) AT3G25960 281 / 8e-88 Pyruvate kinase family protein (.1) AT3G04050 274 / 3e-85 Pyruvate kinase family protein (.1) AT5G56350 271 / 3e-84 Pyruvate kinase family protein (.1) AT5G63680 271 / 8e-84 Pyruvate kinase family protein (.1) AT4G26390 270 / 1e-83 Pyruvate kinase family protein (.1) AT5G08570 269 / 3e-83 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145300 [exp] 794 / 0 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 788 / 0 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.008G159700 [exp] 394 / 1e-130 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 389 / 1e-128 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 327 / 9e-105 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 327 / 1e-104 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 280 / 1e-87 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 277 / 3e-86 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 273 / 7e-85 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039316 [exp] 927 / 0 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10011057 [exp] 800 / 0 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10000672 [exp] 797 / 0 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039396 [exp] 391 / 2e-129 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 388 / 5e-128 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 330 / 1e-105 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 319 / 2e-101 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10041003 [exp] 276 / 8e-86 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 275 / 2e-85 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 270 / 1e-83 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.012G034000.1 pacid=42782932 polypeptide=Potri.012G034000.1.p locus=Potri.012G034000 ID=Potri.012G034000.1.v4.1 annot-version=v4.1 ATGGCGCAAGTAGTGGCTACCACCAGATCGATTCACAGTTCTATCCTATCATCTCCTTCCTCTGGATCCTTACAAGACCGAGTTGATAAGCTACTCAAAC CTTCCACTTTCTCTTCGAAATTTCTTTCAAGTCATGACAAGAAGAAAATTATCAGCAGCGTTTCTTCTCATAGGAACACTCATATTGTGGCGGCGGCTGT TAAGAGATCCGCCGAACCTGAAGTCATTCCTGTCTCACCCGAGGATGTACCAAAGAGGGAGGAGCAATTTGTGCAATTAGAGCAACTAGGTGACACGACA GCAGCTGTTGGAATGTGGACGAAGCCTACTGTTAGGAGAAAGACGAAGATTGTATGTACTATTGGACCGTCAACTAACACGAAGGAGATGATATGGAAGT TGGCTGAAGCGGGAATGAATGTTGCTAGAATGAATATGTCACATGGAGACCACGCTTCTCATCAGAAAGTCATTGATTTGGTTAAAGAGTATAATGCACA GGCGAAAGATAATGTCATTGCCATCATGCTTGATACTAAGGGTCCTGAAGTTAGGAGTGGTGACTTGCCTCAGCCTATCATGCTATCACCTGGACAGGAA TTCACTTTTACGATTCGTAGGGGTGTTGGAACATCTGATTGTGTTAGTGTGAACTATGATGATTTTGTTAGTGATGTAGAAGCAGGCGACATGCTTCTTG TTGATGGCGGTATGATGTCACTTCTGGTGAAGTCCAAAACAGAGGATTCAGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTTAAGTCCAGGCGTCATCT AAATGTTCGAGGAAAAAGCGCGACATTGCCTTCCATCACTGACAAGGATTGGGATGATATAAAATTCGGAGTGGAGAACAAAGTTGACTTCTATGCTGTT TCCTTTGTTAAAGATGCACAAGTGGTTCATGAATTGAAGAATTATCTAAAAAGCTGTGGTGCAGATATACATGTGATTGTAAAAATTGAAAGTGCAGATT CTATACCAAATTTGCATTCGATAATCACAGCATCTGATGGGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTCCCTATTGAGGAGGTTCCCCTGCT GCAGGAAGAGATAATCAGGCTGTGCCGGAGCATGGGAAAAGCTGTTATTGTAGCAACGAATATGCTGGAAAGCATGATTGTTCATCCAACTCCTACCAGA GCAGAGGTATCAGACATTGCCATTGCTGTTCGTGAGGGTGCTGATGCAGTCATGCTTTCTGGAGAAACTGCACATGGAAAATTCCCACTGAAAGCTGTTA AAGTTATGCACACAGTCTCCTTGCGAACTGAAGCAACCATAGCTGGTGGTGAAATGCCATCTAATCTTGGTCAAGCATTCAAGAACCATACTAGTGAGAT GTTTGCATACCATGCAACCATGATGTCAAACACTCTTGGAACCTCAATTGTTGTCTTCACAAGAACTGGCTTCATGTCTATATTACTGAGCCATTATCGA CCTTCAGGCACTGTTTTTGCATTCACAAATGAGAAGAGGATACAACAGAGACTGGCTTTGTATCAAGGAGTGTGTCCCATATACATGCAGTTTTCAGATG ATGCTGAAGAAACCTTTGCAAATGCCTTGTCAGTGCTCAAGAATCAAGGGATGGTAAAGGAAGGAGAAGAGGTCGCACTTGTTCAAAGTGGAAGACAACC AATCTGGCGGTTCCAATCTACCCATAATATTCAGGTCCGCAAAGTATAA
AA sequence Show only first row Show all	>Potri.012G034000.1 pacid=42782932 polypeptide=Potri.012G034000.1.p locus=Potri.012G034000 ID=Potri.012G034000.1.v4.1 annot-version=v4.1 MAQVVATTRSIHSSILSSPSSGSLQDRVDKLLKPSTFSSKFLSSHDKKKIISSVSSHRNTHIVAAAVKRSAEPEVIPVSPEDVPKREEQFVQLEQLGDTT AAVGMWTKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHQKVIDLVKEYNAQAKDNVIAIMLDTKGPEVRSGDLPQPIMLSPGQE FTFTIRRGVGTSDCVSVNYDDFVSDVEAGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITDKDWDDIKFGVENKVDFYAV SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRLCRSMGKAVIVATNMLESMIVHPTPTR AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIAGGEMPSNLGQAFKNHTSEMFAYHATMMSNTLGTSIVVFTRTGFMSILLSHYR PSGTVFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFANALSVLKNQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Potri.012G034000 [exp]	0	1
AT1G65295			unknown protein		Potri.019G053100 [exp]	11.31	0.8109
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.010G241500 [exp]	11.31	0.8343
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	12.96	0.8069
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.016G046701 [exp]	14.07	0.8126
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	15.49	0.8256	ATCSLA02.1
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.007G055300 [exp]	15.81	0.8156	CYCD5.1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	18.73	0.8102
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.019G093300 [exp]	19.44	0.8114	2,Pt-FLA9.2
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	22.20	0.8009
AT3G18800			unknown protein		Potri.001G309000 [exp]	22.80	0.7694

Compare expression of checked genes

Potri.012G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.