Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 505 / 3e-177 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 453 / 7e-157 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 405 / 8e-138 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 230 / 3e-70 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 211 / 5e-63 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 207 / 2e-61 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 205 / 1e-60 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 205 / 1e-60 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 204 / 2e-60 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 201 / 2e-59 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030600 [exp] 577 / 0 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 504 / 6e-177 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 456 / 9e-158 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 406 / 2e-138 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 395 / 1e-133 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 391 / 2e-132 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 280 / 3e-92 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 234 / 1e-71 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 219 / 9e-66 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025711 [exp] 477 / 6e-166 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 473 / 1e-164 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 459 / 3e-159 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 407 / 2e-138 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 245 / 1e-75 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 222 / 9e-69 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 216 / 1e-64 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 214 / 1e-63 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 200 / 2e-58 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 195 / 1e-56 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.012G034100.1 pacid=42783863 polypeptide=Potri.012G034100.1.p locus=Potri.012G034100 ID=Potri.012G034100.1.v4.1 annot-version=v4.1 ATGGCAGATAGTGATGATAAGATTCATGTGGCCATGTTCCCATGGCTAGCCTTTGGTCATATGATGCCATGGCTAGAACTTGCCAAACTATTTGCTGCAA AGGGTCACAAAATCTCCTTCATATCCACCCCTAGAAACATCGATCGCCTCCCAAAACCACCTGCAGATGTATCGTCTACTCTGCACTTTGTAAAGCTGCC GTTGCCGCAAGTAGAGGGTCTACCTCCAGATGCTGAGGCCACAATTGACTTGCCAGCTAACAAGGTACAATATCTCAAGACAGCCCTTGACAAGGTCCAA GAACCCTTTGCCAAGGTTCTTGAGTCATTAAATCCAGATTGGATCTTCTACGATTTTGCTCAATACTGGACCGGGCCAATTGCGGCTCAACTGGGCATCA AAAGTACATACTTCTCTATATGCATTGCAGCGATGGTGGCCTTTCTTGGTCCGCCATCGCCCTTGATCGACGGTGATGATTATCGCAAAAAACCCGAAGA TTTCACGATCCCACCAAAGTGGGTATCGTTTCAGACAACAGTCGCTTATAAGTACTATGACATCATGAACACATTTGACTGTGTTGAGGATGATGCTTCA GGTGTCAACGACTTGAAGCGTTGGGGCTTGTGTCTACAATCATGTGATTTTATTGCAGTTCGGTCCTCCTTCGAGATCGAACCAGAATGGCTCCAAGTTC TCGAAACTATCCACGAGAAACCCGTTTTCCCGGTTGGTCAGCTGCCTCCTGTAGAGTACGAATTAGAAGAGAAAAATTCAGACGCTTGGAGTTCAATGAA GAAGTGGCTTGACATGCAAGAGAAGAGCTCGGTAGTGTATGTAGCTTTTGGTAGCGAGGCAAAACCAAGTCAAGCCCAGCTAACCGAGTTAGCACTCGGG TTAGAGTTGTCTGGTTTACCATTCTTCTGGGTTCTCAGGACTCGGCGTGGGATTACGGATACTGACTTGATTGAGTTACCACCTGGGTTTGAGGAGCGAA CCAAAGGACAAGGAGTGGTTTGCACAACTTGGGCTCCTCAACTCATGATCTTGGCTCATGAATCGATTGCTGGGTTCTTGACTCACTCTGGGTGGAGCTC TGTGGTGGAGGCACTTACGTTTCAGAAGGCGCTCATACTTCTAACATTCTATTCAGATCAAGGGATAAATGCTAGGGTTTTGGAGGAGAAGAAGATTGGG TACTCCATACCAAGAAACGAGTTGGATGGGTCTTTTACTAGAGACTCAGTGGCTGAGTCATTGAGACTGGTGATGGTGAGTGAAGAAGGGAAGATGTATA GAGACAAGGCTAAGGAGATGAGTGGTTTGTTTGGTGATAGGGATAGGCAGGACAAGTACGTGGACAACATTTTGATTTACCTCAAAAGTCACAGACCTGT CAAGAAAGCCAAGAGATTTGTCTTTTAA
AA sequence Show only first row Show all	>Potri.012G034100.1 pacid=42783863 polypeptide=Potri.012G034100.1.p locus=Potri.012G034100 ID=Potri.012G034100.1.v4.1 annot-version=v4.1 MADSDDKIHVAMFPWLAFGHMMPWLELAKLFAAKGHKISFISTPRNIDRLPKPPADVSSTLHFVKLPLPQVEGLPPDAEATIDLPANKVQYLKTALDKVQ EPFAKVLESLNPDWIFYDFAQYWTGPIAAQLGIKSTYFSICIAAMVAFLGPPSPLIDGDDYRKKPEDFTIPPKWVSFQTTVAYKYYDIMNTFDCVEDDAS GVNDLKRWGLCLQSCDFIAVRSSFEIEPEWLQVLETIHEKPVFPVGQLPPVEYELEEKNSDAWSSMKKWLDMQEKSSVVYVAFGSEAKPSQAQLTELALG LELSGLPFFWVLRTRRGITDTDLIELPPGFEERTKGQGVVCTTWAPQLMILAHESIAGFLTHSGWSSVVEALTFQKALILLTFYSDQGINARVLEEKKIG YSIPRNELDGSFTRDSVAESLRLVMVSEEGKMYRDKAKEMSGLFGDRDRQDKYVDNILIYLKSHRPVKKAKRFVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22590			UDP-Glycosyltransferase superf...		Potri.012G034100 [exp]	0	1
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	2.82	0.9053
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	5.00	0.8928
AT4G35160			O-methyltransferase family pro...		Potri.013G121900 [exp]	6.63	0.8996
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	6.78	0.9131
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.005G131300 [exp]	10.29	0.8640
AT1G72510			Protein of unknown function (D...		Potri.001G166900 [exp]	12.40	0.8570
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	13.03	0.8808	Pt-AUX28.3
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.008G071700 [exp]	13.85	0.8815
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.014G144600 [exp]	15.49	0.8614
AT1G04280			P-loop containing nucleoside t...		Potri.008G162000 [exp]	17.74	0.8716

Compare expression of checked genes

Potri.012G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.