Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65770 845 / 0 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 826 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G67230 276 / 2e-77 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 228 / 3e-61 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 191 / 2e-49 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111400 [exp] 295 / 2e-83 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.015G024900 [exp] 256 / 2e-78 ND / Potri.008G114800 [exp] 255 / 5e-70 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019257 [exp] 901 / 0 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 863 / 0 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10034383 [exp] 268 / 3e-74 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034263 [exp] 263 / 2e-72 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10003075 [exp] 249 / 4e-68 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 210 / 1e-55 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 201 / 1e-52 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 197 / 3e-51 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G034300.1 pacid=42784151 polypeptide=Potri.012G034300.1.p locus=Potri.012G034300 ID=Potri.012G034300.1.v4.1 annot-version=v4.1 ATGACGAGTCCGATCACGCCAAGCAATGGCAGTGGTAGGGCTTTATCGTTAACGTCAAGTGCTAGAGTCTTGAAGACTCCTTTAACTGACGACAAGATCT GGAAACGACTTAAAGAGGCTGGATTTGATGAAGAATCCGTTAAAAGAAGAGATAAGGCTGCTCTTATTGCCTATATTGCAAATCTTGAAGCCGAGATGTT TGACCTTCAATACCATATGGGGCTTCTCATATTGGAAAAAAAAGAGTGGACTTCGAAATATGATCAAATGAAATCGTCTGCCGAAACAGCTGATTTAATG CGTAGGCGTGATCAAGCTTCACATTTATCTGCCTTAGCTGAGGCGAGGAAACGAGAAGAAAGTTTGAAGAAGGCTTTAGGAGTTGAGAAAGAGTGTATAT CAAGTATGGAGAAAGCATTGCATGAGATGCGGGCAGAATCTGCTGAAACCAAGGTTGCAGCTGACTCTAAGTTGTCTGAAGCCCGCGATATGGTACAAGA TGCCCAGAAAAAGTTTTTAGATGCTGAGGCAAAACTGCATGCTGCTGAAGCTTTGCAAGCAGAAGCTAGCCGGTATCATCGAGCTGCAGAAAGAAAGCTC CAGGAAGTTGAGGCACGTGAAGCTGATCTTAGCAGGCGTATGACAGCTTTCAAAACTGATTGTGATGCAAAAGAGAAGGAGATTGGTCTTGAGAGACAAT CTTTGAGTGAAAGACGGAAGGTTTTGCAGCAGGAACAGGAAAGTTTACTTGATGGACAAGCTTTGCTGAACCAGAGGGAGGATTATGTTGCCAATAAATC TCAAGAGCTGAATCAACTTGAAAAAGTGCTGGAAGTCTCAAAAGAAAATATTGAGAAGGAACTTAGAGCCCTAAATGATGAGAAATCCAAGCTGGAGCTG ACCATAGCTTCCTTGTCTCAAAGAGAGGAGGCTGTTATTGAGAGAGAAGCTCAACTAAGCAAGAGAGAACAAGAGCTACTTGTTTTCCAGGAAAAGCTTG CCAGCAAGGAATCGGTCGAAATTCAAAAAGTTACTGCCAGTCATGAGAATGTTTTGAGAACAAGGAATTCAGAATTTGAAGCAGAGCTGGACAAGAAACG CAAATTGGTGGAAGATGAAATTGAAGCCAAGAGACGGGCTTGGGAACTAAGAGAGGTTGATCTTAAACAGAGGGAGGACCTAGTGCTAGAAAAGGAACAT GACTTGGAGGTTCAATCAAGAGCCTTGGTAGATAAGGAAAAGGATGTGACAGACAAGATCAACTTTCTTGATGATAAAGAAAGAAGTTTGAATGTTGTTG AGAAGGATATTGAATTGAGAAGAGCTCTTCTGCTGCAAGAAAGAGAAGAGATTAACAAAACAAAGCTAGATCTTCAGAAGTCGTTGGACTCTTTGGAAGA CAAAAGGAAACAAGTTGATTGTGCAAAGGAGAAACTACAGACCATGACAAGTGAAACAAATGAATATGCAGCTTTAGAGATGAAACTGAAAGAAGAAGTT GACACTCTTAGGGCTCAGAAACTAGAACTTGTGGATGAGGAAGACAGACTGAAAAATGAGAAGGGCAAATTTGAAACTGAGTGGGAGTTGATTGATGAAA AAAGAGAGGAGCTAAGGAAGGAAGCCGAACGTGTAGCTGAGGAGAGAGAAGCTGTTTCCAGGTTGCTCAAAGAAGAGCGTGATAGCCTTAGACTAGAGAA GAAAGAAATACGAGATCAACATAAGAAAGATGTTGAGTCTCTTAATCATGAGCGTGAAGATTTCATGAATAAAATGGAACAAGAGCGCTCTGAATGGTTC AACAGGATTCAGAAGGAACATTCAGACTTCTTGTTGGGCATTGAGATGCAGAAGAGGGAATTAGAGAGCAGTATTGATAAAAGGCGTGAAGAGATAGAAA GCTATTTAAGGGATAAAGAGAAAGCTTTTGAGCTAGAAAAGAAAAGTGAGCTTCAACATATTGCTTCTCTTAGAGAAAAAGCAGAAAAAGAGTTGGAACA AGTTACTTTAGAAATGAAGAAACTTGATGCCGAGAGAATGGAGATAAATTTGGACCGTGAGCGAAGGGATGGGGAATGGGCAATGCTGAATAAATCCATT GAGGAACTCAAGGGTCAGACACAGAAATTAGAGAAACAAAGGCAACTGTTACGTGGAGAGAGAGAAGAGATTTATGTTCAGATTGAGCAACTAAAAAAAT TGGATAATTTGAAACTTGCCTTGGATGATATGGAAATGGAAGAGATGCAACTATCCAATATGGAGTCTAGCCGCCAGAAAATATCTACAATAAGACGTTT GAAGCAACAAACTACTGTACAAGATACTGATTTGGCTTCATATGGAAAAGTAGATGCTGCCAGCAATGTAGGTGGACTCAACTCTCCTACACCAAAAACA AGTGTTGCTTCCCCCACTAACTCTGCTCGTTTTTCTTGGATAAAGCGTTGCACTGAATTGGTCTTCAAAAATTCCCCTGAGAAGCCCTCATCAAGGAGCG AGGAGTCTGGGATGTCTGGCCACGAAGATACAAGTTTGACAGCTGGAAAATTGGATTCTTCCAATGGATACTGTGGGAAAAAGCTCAAGTCGGTACAAAT TTTTGACAAGAGTCAACCTATCAGATATGCTTATGGTGAGCCAAAAGTGATACTTGAAGTGCCTCCTAAAGGAGATATTTCTAAGGAATCATGCGGTGTT GAATATGATATCATGGAAGTTGCAAATGAAAGGCTCACATTCCCAATTTCTGATCTAGCACCACAGGCTGAAAGGAAACGACGCGTTGACAATTCATCTT TAGATAATTCTGTTGATTCTCAGCATGGGAAAGGTCAGAGCAATAAGAGGAGGAGGCAAGAGGAAATTGCCAGTGCAATTTTACCTGAAGATACTGTTAA TGACAGTGTAACTTCAACCCAGGAAGCTGTTTGTAAGGATCAGCATGCAGCTGAAGAAGCAGATGTAGTAATTATGGACAAAATCATTAAAGTTTCTGAA GTGACTTGTGAAATAACTAGCACAGACACTTTTGCTCATCAAGAAATATCAGTGCAGCTTCAAAGTTCTGAAAAGACATCCCACCACAATACTGGTATAG ACAAGGAGGTTTCAGAAGTGTTAAAGGAGTAG
AA sequence Show only first row Show all	>Potri.012G034300.1 pacid=42784151 polypeptide=Potri.012G034300.1.p locus=Potri.012G034300 ID=Potri.012G034300.1.v4.1 annot-version=v4.1 MTSPITPSNGSGRALSLTSSARVLKTPLTDDKIWKRLKEAGFDEESVKRRDKAALIAYIANLEAEMFDLQYHMGLLILEKKEWTSKYDQMKSSAETADLM RRRDQASHLSALAEARKREESLKKALGVEKECISSMEKALHEMRAESAETKVAADSKLSEARDMVQDAQKKFLDAEAKLHAAEALQAEASRYHRAAERKL QEVEAREADLSRRMTAFKTDCDAKEKEIGLERQSLSERRKVLQQEQESLLDGQALLNQREDYVANKSQELNQLEKVLEVSKENIEKELRALNDEKSKLEL TIASLSQREEAVIEREAQLSKREQELLVFQEKLASKESVEIQKVTASHENVLRTRNSEFEAELDKKRKLVEDEIEAKRRAWELREVDLKQREDLVLEKEH DLEVQSRALVDKEKDVTDKINFLDDKERSLNVVEKDIELRRALLLQEREEINKTKLDLQKSLDSLEDKRKQVDCAKEKLQTMTSETNEYAALEMKLKEEV DTLRAQKLELVDEEDRLKNEKGKFETEWELIDEKREELRKEAERVAEEREAVSRLLKEERDSLRLEKKEIRDQHKKDVESLNHEREDFMNKMEQERSEWF NRIQKEHSDFLLGIEMQKRELESSIDKRREEIESYLRDKEKAFELEKKSELQHIASLREKAEKELEQVTLEMKKLDAERMEINLDRERRDGEWAMLNKSI EELKGQTQKLEKQRQLLRGEREEIYVQIEQLKKLDNLKLALDDMEMEEMQLSNMESSRQKISTIRRLKQQTTVQDTDLASYGKVDAASNVGGLNSPTPKT SVASPTNSARFSWIKRCTELVFKNSPEKPSSRSEESGMSGHEDTSLTAGKLDSSNGYCGKKLKSVQIFDKSQPIRYAYGEPKVILEVPPKGDISKESCGV EYDIMEVANERLTFPISDLAPQAERKRRVDNSSLDNSVDSQHGKGQSNKRRRQEEIASAILPEDTVNDSVTSTQEAVCKDQHAAEEADVVIMDKIIKVSE VTCEITSTDTFAHQEISVQLQSSEKTSHHNTGIDKEVSEVLKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	0	1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	4.47	0.8653	HAF902
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.011G169100 [exp]	5.29	0.8570
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.012G042500 [exp]	5.47	0.8126
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	8.48	0.8479	PAFC901
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	8.94	0.8079
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	9.38	0.8216	Pt-XLG.2
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	9.59	0.8622
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	11.35	0.8587
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	11.74	0.8202
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.002G103500 [exp]	14.00	0.7757	Pt-CYCD2.1

Compare expression of checked genes

Potri.012G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.